Variant report

Variant	rs7043426
Chromosome Location	chr9:98716164-98716165
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:98714723..98717480-chr9:98722998..98725165,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11998816	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12000947	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12001253	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12004510	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12004765	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45604033	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55870020	1.00[EUR][1000 genomes]
rs56275194	1.00[EUR][1000 genomes]
rs56938111	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58715455	1.00[EUR][1000 genomes]
rs59510923	1.00[EUR][1000 genomes]
rs60301271	1.00[EUR][1000 genomes]
rs6478983	1.00[EUR][1000 genomes]
rs6479043	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7021641	1.00[EUR][1000 genomes]
rs7030110	0.83[AMR][1000 genomes]
rs7030427	1.00[EUR][1000 genomes]
rs7031397	1.00[EUR][1000 genomes]
rs7039115	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7041571	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7043732	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7046189	1.00[EUR][1000 genomes]
rs7047126	1.00[EUR][1000 genomes]
rs73528896	1.00[EUR][1000 genomes]
rs73528901	1.00[EUR][1000 genomes]
rs73530711	1.00[EUR][1000 genomes]
rs73534614	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73656542	1.00[EUR][1000 genomes]
rs73656543	1.00[EUR][1000 genomes]
rs73656554	1.00[EUR][1000 genomes]
rs73656561	1.00[EUR][1000 genomes]
rs73656564	1.00[EUR][1000 genomes]
rs7847478	1.00[EUR][1000 genomes]
rs7850319	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7854738	1.00[EUR][1000 genomes]
rs7860019	1.00[EUR][1000 genomes]
rs7875882	1.00[EUR][1000 genomes]
rs892647	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893599	chr9:98542410-98991254	Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
2	nsv893600	chr9:98608989-98775459	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
3	nsv1035723	chr9:98701628-98734356	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98640000-98718600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr9:98649400-98718600	Weak transcription	Spleen	Spleen
3	chr9:98675400-98718600	Weak transcription	Esophagus	oesophagus
4	chr9:98678800-98718600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr9:98681800-98736600	Weak transcription	Colonic Mucosa	Colon
6	chr9:98686400-98743800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr9:98687800-98718400	Weak transcription	Stomach Mucosa	stomach
8	chr9:98687800-98726000	Weak transcription	Gastric	stomach
9	chr9:98695600-98718200	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr9:98695800-98742400	Weak transcription	NHLF	lung
11	chr9:98699600-98717600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr9:98699800-98718600	Weak transcription	NHEK	skin
13	chr9:98702400-98718600	Weak transcription	Rectal Smooth Muscle	rectum
14	chr9:98702400-98718600	Weak transcription	Small Intestine	intestine
15	chr9:98702600-98718600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr9:98702600-98718600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr9:98702600-98718600	Weak transcription	Aorta	Aorta
18	chr9:98702600-98718600	Weak transcription	Pancreas	Pancrea
19	chr9:98705000-98718600	Weak transcription	K562	blood
20	chr9:98705000-98718800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr9:98705200-98716200	Weak transcription	Brain Cingulate Gyrus	brain
22	chr9:98705400-98734200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr9:98706400-98777400	Weak transcription	Psoas Muscle	Psoas
24	chr9:98706800-98734000	Weak transcription	Hela-S3	cervix
25	chr9:98709200-98718200	Weak transcription	NHDF-Ad	bronchial
26	chr9:98709400-98716200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr9:98709600-98718600	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr9:98709800-98716200	Weak transcription	Adipose Nuclei	Adipose
29	chr9:98709800-98716400	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr9:98709800-98717000	Weak transcription	Thymus	Thymus
31	chr9:98709800-98718600	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr9:98709800-98718600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr9:98709800-98718600	Weak transcription	Left Ventricle	heart
34	chr9:98709800-98718800	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr9:98709800-98718800	Weak transcription	Right Ventricle	heart
36	chr9:98709800-98727800	Weak transcription	Stomach Smooth Muscle	stomach
37	chr9:98710000-98718200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr9:98710000-98718400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr9:98710000-98718400	Weak transcription	NH-A	brain
40	chr9:98710000-98718600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr9:98710000-98718600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr9:98710000-98718600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr9:98710000-98718600	Weak transcription	Brain Angular Gyrus	brain
44	chr9:98710000-98718600	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr9:98710000-98718600	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr9:98710000-98719200	Weak transcription	Colon Smooth Muscle	Colon
47	chr9:98710000-98720000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr9:98710000-98734200	Weak transcription	HMEC	breast
49	chr9:98710000-98735000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr9:98710200-98716200	Weak transcription	Primary T cells from cord blood	blood

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