Variant report
| Variant | rs73528901 |
|---|---|
| Chromosome Location | chr9:98554413-98554414 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:39)
| rs_ID | r2[population] |
|---|---|
| rs11998816 | 1.00[EUR][1000 genomes] |
| rs12000947 | 1.00[EUR][1000 genomes] |
| rs12001253 | 1.00[EUR][1000 genomes] |
| rs12004510 | 1.00[EUR][1000 genomes] |
| rs12004765 | 1.00[EUR][1000 genomes] |
| rs45604033 | 1.00[EUR][1000 genomes] |
| rs55870020 | 1.00[EUR][1000 genomes] |
| rs56275194 | 1.00[EUR][1000 genomes] |
| rs56938111 | 1.00[EUR][1000 genomes] |
| rs58323561 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58715455 | 1.00[EUR][1000 genomes] |
| rs59510923 | 1.00[EUR][1000 genomes] |
| rs60301271 | 1.00[EUR][1000 genomes] |
| rs6478983 | 1.00[EUR][1000 genomes] |
| rs6479043 | 1.00[EUR][1000 genomes] |
| rs7021641 | 1.00[EUR][1000 genomes] |
| rs7030427 | 1.00[EUR][1000 genomes] |
| rs7031397 | 1.00[EUR][1000 genomes] |
| rs7039115 | 1.00[EUR][1000 genomes] |
| rs7041571 | 1.00[EUR][1000 genomes] |
| rs7043426 | 1.00[EUR][1000 genomes] |
| rs7043732 | 1.00[EUR][1000 genomes] |
| rs7046189 | 1.00[EUR][1000 genomes] |
| rs7047126 | 1.00[EUR][1000 genomes] |
| rs73528896 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73530711 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73534614 | 1.00[EUR][1000 genomes] |
| rs73656542 | 1.00[EUR][1000 genomes] |
| rs73656543 | 1.00[EUR][1000 genomes] |
| rs73656554 | 1.00[EUR][1000 genomes] |
| rs73656561 | 1.00[EUR][1000 genomes] |
| rs73656564 | 1.00[EUR][1000 genomes] |
| rs7846950 | 0.93[AFR][1000 genomes] |
| rs7847478 | 1.00[EUR][1000 genomes] |
| rs7850319 | 1.00[EUR][1000 genomes] |
| rs7854738 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7860019 | 1.00[EUR][1000 genomes] |
| rs7875882 | 1.00[EUR][1000 genomes] |
| rs892647 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv893598 | chr9:98508628-98645674 | Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 46 gene(s) | inside rSNPs | diseases |
| 2 | nsv482884 | chr9:98530027-98691937 | Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 43 gene(s) | inside rSNPs | diseases |
| 3 | nsv893599 | chr9:98542410-98991254 | Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 52 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:98548200-98558400 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
| 2 | chr9:98548400-98578400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 3 | chr9:98553000-98555800 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
