Variant report

Variant	rs7041571
Chromosome Location	chr9:98697786-98697787
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:98686572..98689249-chr9:98695203..98698057,2	MCF-7	breast:
2	chr9:98692437..98694773-chr9:98695538..98697868,2	K562	blood:
3	chr9:98638841..98641088-chr9:98696754..98699064,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11998816	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12000947	1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12001253	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12004510	1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12004765	0.88[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45604033	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55870020	1.00[EUR][1000 genomes]
rs56275194	1.00[EUR][1000 genomes]
rs56938111	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58715455	1.00[EUR][1000 genomes]
rs59510923	1.00[EUR][1000 genomes]
rs60301271	1.00[EUR][1000 genomes]
rs6478983	1.00[EUR][1000 genomes]
rs6479043	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7021641	1.00[EUR][1000 genomes]
rs7028929	1.00[TSI][hapmap]
rs7030110	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7030427	1.00[EUR][1000 genomes]
rs7031397	1.00[EUR][1000 genomes]
rs7039115	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7043426	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7043732	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7046189	1.00[EUR][1000 genomes]
rs7047126	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs73528896	1.00[EUR][1000 genomes]
rs73528901	1.00[EUR][1000 genomes]
rs73530711	1.00[EUR][1000 genomes]
rs73534614	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73656542	1.00[EUR][1000 genomes]
rs73656543	1.00[EUR][1000 genomes]
rs73656554	1.00[EUR][1000 genomes]
rs73656561	1.00[EUR][1000 genomes]
rs73656564	1.00[EUR][1000 genomes]
rs7847478	1.00[EUR][1000 genomes]
rs7850319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7854738	1.00[EUR][1000 genomes]
rs7860019	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7875882	1.00[EUR][1000 genomes]
rs892647	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893599	chr9:98542410-98991254	Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
2	nsv893600	chr9:98608989-98775459	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
3	esv1801890	chr9:98660433-98701801	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Enhancers Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98638800-98702200	Weak transcription	Pancreas	Pancrea
2	chr9:98640000-98718600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr9:98645800-98702200	Weak transcription	Aorta	Aorta
4	chr9:98649400-98718600	Weak transcription	Spleen	Spleen
5	chr9:98660000-98706000	Weak transcription	Fetal Heart	heart
6	chr9:98673600-98702200	Weak transcription	Small Intestine	intestine
7	chr9:98675400-98718600	Weak transcription	Esophagus	oesophagus
8	chr9:98677600-98709000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr9:98678000-98699200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr9:98678000-98699600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr9:98678600-98705600	Weak transcription	Psoas Muscle	Psoas
12	chr9:98678800-98718600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr9:98679400-98698600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr9:98680800-98706000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr9:98681800-98736600	Weak transcription	Colonic Mucosa	Colon
16	chr9:98682400-98698000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr9:98683200-98697800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr9:98683400-98702600	Strong transcription	HSMM	muscle
19	chr9:98684800-98697800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr9:98685400-98699600	Strong transcription	Primary T cells from cord blood	blood
21	chr9:98685800-98698400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr9:98686000-98699200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr9:98686200-98699400	Weak transcription	NHEK	skin
24	chr9:98686400-98702200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr9:98686400-98709000	Weak transcription	Right Ventricle	heart
26	chr9:98686400-98711000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr9:98686400-98743800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr9:98687800-98700600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr9:98687800-98701800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr9:98687800-98703400	Weak transcription	Hela-S3	cervix
31	chr9:98687800-98709000	Weak transcription	Lung	lung
32	chr9:98687800-98718400	Weak transcription	Stomach Mucosa	stomach
33	chr9:98687800-98726000	Weak transcription	Gastric	stomach
34	chr9:98688400-98699000	Weak transcription	Brain Substantia Nigra	brain
35	chr9:98688400-98702400	Strong transcription	HUES6 Cell Line	embryonic stem cell
36	chr9:98688600-98705800	Weak transcription	Colon Smooth Muscle	Colon
37	chr9:98688800-98703600	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr9:98689400-98700400	Strong transcription	Dnd41	blood
39	chr9:98689800-98697800	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr9:98689800-98700600	Strong transcription	Primary hematopoietic stem cells	blood
41	chr9:98689800-98703600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr9:98690000-98698800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr9:98690200-98699600	Strong transcription	Skeletal Muscle Female	skeletal muscle
44	chr9:98690400-98699600	Strong transcription	Adipose Nuclei	Adipose
45	chr9:98690400-98707000	Strong transcription	Primary T helper cells fromperipheralblood	blood
46	chr9:98690600-98698000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr9:98690600-98709800	Weak transcription	HMEC	breast
48	chr9:98691000-98699800	Strong transcription	Duodenum Smooth Muscle	Duodenum
49	chr9:98691000-98700800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr9:98691400-98699400	Strong transcription	Cortex derived primary cultured neurospheres	brain

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