Variant report

Variant	rs7039115
Chromosome Location	chr9:98745252-98745253
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:98738858..98741119-chr9:98744573..98746228,2	MCF-7	breast:
2	chr9:98636021..98638369-chr9:98744336..98747127,2	K562	blood:

Variant related genes	Relation type
ENSG00000182150	Chromatin interaction
ENSG00000175611	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11998816	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12000947	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12001253	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12004510	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12004765	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45604033	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55870020	1.00[EUR][1000 genomes]
rs56275194	1.00[EUR][1000 genomes]
rs56938111	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58715455	1.00[EUR][1000 genomes]
rs59510923	1.00[EUR][1000 genomes]
rs60301271	1.00[EUR][1000 genomes]
rs6478983	1.00[EUR][1000 genomes]
rs6479043	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7021641	1.00[EUR][1000 genomes]
rs7030427	1.00[EUR][1000 genomes]
rs7031397	1.00[EUR][1000 genomes]
rs7041571	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7043426	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7043732	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7046189	1.00[EUR][1000 genomes]
rs7047126	1.00[EUR][1000 genomes]
rs73528896	1.00[EUR][1000 genomes]
rs73528901	1.00[EUR][1000 genomes]
rs73530711	1.00[EUR][1000 genomes]
rs73534614	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73656542	1.00[EUR][1000 genomes]
rs73656543	1.00[EUR][1000 genomes]
rs73656554	1.00[EUR][1000 genomes]
rs73656561	1.00[EUR][1000 genomes]
rs73656564	1.00[EUR][1000 genomes]
rs7850319	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7854738	1.00[EUR][1000 genomes]
rs7860019	1.00[EUR][1000 genomes]
rs7875882	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs892647	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893599	chr9:98542410-98991254	Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
2	nsv893600	chr9:98608989-98775459	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98706400-98777400	Weak transcription	Psoas Muscle	Psoas
2	chr9:98714000-98782600	Weak transcription	HUVEC	blood vessel
3	chr9:98719000-98751400	Weak transcription	Stomach Mucosa	stomach
4	chr9:98719200-98749600	Weak transcription	Fetal Intestine Small	intestine
5	chr9:98719200-98749800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr9:98719200-98752800	Weak transcription	Pancreas	Pancrea
7	chr9:98719200-98764200	Weak transcription	Spleen	Spleen
8	chr9:98719200-98767800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr9:98719400-98767200	Weak transcription	Right Ventricle	heart
10	chr9:98719400-98771000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr9:98719600-98766800	Weak transcription	Colon Smooth Muscle	Colon
12	chr9:98722400-98747800	Weak transcription	Fetal Heart	heart
13	chr9:98723800-98749800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr9:98726400-98767800	Weak transcription	Gastric	stomach
15	chr9:98730600-98751200	Weak transcription	Small Intestine	intestine
16	chr9:98732200-98747400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr9:98732200-98751200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr9:98733000-98749600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr9:98734600-98749800	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr9:98734600-98764400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr9:98734600-98767800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr9:98734600-98782400	Weak transcription	NHEK	skin
23	chr9:98735200-98751600	Weak transcription	NHDF-Ad	bronchial
24	chr9:98735400-98747200	Weak transcription	A549	lung
25	chr9:98735400-98778400	Weak transcription	Hela-S3	cervix
26	chr9:98735800-98747200	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr9:98735800-98747200	Weak transcription	HMEC	breast
28	chr9:98735800-98748400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr9:98735800-98764200	Weak transcription	Placenta	Placenta
30	chr9:98735800-98766600	Weak transcription	Stomach Smooth Muscle	stomach
31	chr9:98735800-98770600	Weak transcription	K562	blood
32	chr9:98735800-98771200	Weak transcription	HepG2	liver
33	chr9:98736000-98746800	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr9:98736000-98747200	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr9:98736000-98747400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr9:98736000-98747600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr9:98736000-98749800	Weak transcription	Lung	lung
38	chr9:98736000-98751400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr9:98736200-98752800	Weak transcription	Fetal Muscle Trunk	muscle
40	chr9:98736400-98747400	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr9:98736400-98747600	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr9:98736400-98749200	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr9:98736400-98751000	Weak transcription	Ovary	ovary
44	chr9:98736600-98778800	Weak transcription	Fetal Brain Male	brain
45	chr9:98736800-98747200	Weak transcription	Primary B cells from cord blood	blood
46	chr9:98737000-98766800	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr9:98738800-98756400	Weak transcription	Aorta	Aorta
48	chr9:98740800-98747200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr9:98741400-98745800	Enhancers	Cortex derived primary cultured neurospheres	brain
50	chr9:98741600-98745400	Enhancers	HSMMtube	muscle

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