Variant report

Variant	rs7088018
Chromosome Location	chr10:93394849-93394850
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr10:93394775-93395939	A549	lung:	n/a	chr10:93395337-93395347 chr10:93395329-93395350 chr10:93395334-93395352 chr10:93395336-93395349
2	SPI1	chr10:93394685-93394979	GM12891	blood:	n/a	n/a
3	SPI1	chr10:93394682-93395008	GM12878	blood:	n/a	n/a
4	CHD1	chr10:93394702-93396067	IMR90	lung:	n/a	n/a
5	SPI1	chr10:93394718-93394959	GM12891	blood:	n/a	n/a
6	SMC3	chr10:93394731-93396036	SK-N-SH	brain:	n/a	chr10:93395336-93395346 chr10:93395336-93395350
7	WRNIP1	chr10:93394848-93394901	GM12878	blood:	n/a	n/a
8	RAD21	chr10:93394629-93396033	SK-N-SH	brain:	n/a	chr10:93395335-93395348 chr10:93395336-93395346 chr10:93395332-93395351

No.	Distal block	Cell Line	Cell type
1	chr10:93387435..93390652-chr10:93392972..93396624,3	K562	blood:
2	chr10:93168171..93171020-chr10:93393075..93396525,3	K562	blood:
3	chr10:30030808..30031790-chr10:93394836..93395663,2	MCF-7	breast:
4	chr10:93252757..93253678-chr10:93394838..93395687,3	K562	blood:
5	chr10:93311362..93313128-chr10:93394763..93396863,21	MCF-7	breast:
6	chr10:93168063..93170852-chr10:93390602..93395151,5	MCF-7	breast:
7	chr10:93343830..93345636-chr10:93394100..93396852,2	K562	blood:
8	chr10:93386300..93388872-chr10:93393581..93396543,2	MCF-7	breast:

Variant related genes	Relation type
PPP1R3C	TF binding region
ENSG00000165338	Chromatin interaction

rs_ID	r²[population]
rs12240933	1.00[JPT][hapmap]
rs2421619	0.88[AFR][1000 genomes]
rs4607983	0.92[AFR][1000 genomes]
rs57609269	0.92[AFR][1000 genomes]
rs58049168	0.92[AFR][1000 genomes]
rs58579342	0.92[AFR][1000 genomes]
rs60400838	0.92[AFR][1000 genomes]
rs7071663	0.85[YRI][hapmap];0.88[AFR][1000 genomes]
rs7087444	1.00[AFR][1000 genomes]
rs73320159	0.88[AFR][1000 genomes]
rs73320161	0.92[AFR][1000 genomes]
rs73320165	0.92[AFR][1000 genomes]
rs73320170	0.92[AFR][1000 genomes]
rs73320175	0.92[AFR][1000 genomes]
rs73320176	0.80[AFR][1000 genomes]
rs73320178	0.92[AFR][1000 genomes]
rs73320183	0.92[AFR][1000 genomes]
rs73320188	0.92[AFR][1000 genomes]
rs73320195	0.92[AFR][1000 genomes]
rs73320196	0.92[AFR][1000 genomes]
rs73320202	1.00[AFR][1000 genomes]
rs73322006	1.00[AFR][1000 genomes]
rs73322009	1.00[AFR][1000 genomes]
rs73322014	1.00[AFR][1000 genomes]
rs73322017	1.00[AFR][1000 genomes]
rs73322019	0.88[AFR][1000 genomes]
rs73322022	0.88[AFR][1000 genomes]
rs73322023	1.00[AFR][1000 genomes]
rs73322027	0.88[AFR][1000 genomes]
rs73322031	1.00[AFR][1000 genomes]

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93393400-93395600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:93393400-93403600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:93393600-93395000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr10:93393600-93395000	Weak transcription	Adipose Nuclei	Adipose
5	chr10:93393600-93395200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr10:93393600-93395200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr10:93393600-93395200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr10:93393600-93395200	Enhancers	Colon Smooth Muscle	Colon
9	chr10:93393600-93395400	Weak transcription	Brain Germinal Matrix	brain
10	chr10:93393600-93395400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr10:93393600-93395400	Weak transcription	Fetal Intestine Large	intestine
12	chr10:93393600-93395400	Weak transcription	Right Atrium	heart
13	chr10:93393600-93396000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr10:93393600-93396000	Enhancers	Hela-S3	cervix
15	chr10:93393600-93397200	Enhancers	Liver	Liver
16	chr10:93393600-93402800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr10:93393800-93395000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr10:93393800-93395000	Enhancers	A549	lung
19	chr10:93393800-93395000	Weak transcription	HMEC	breast
20	chr10:93393800-93395000	Weak transcription	NHEK	skin
21	chr10:93393800-93395000	Weak transcription	Osteobl	bone
22	chr10:93393800-93395200	Weak transcription	Fetal Stomach	stomach
23	chr10:93393800-93395400	Weak transcription	Brain Anterior Caudate	brain
24	chr10:93393800-93395400	Weak transcription	HSMM	muscle
25	chr10:93393800-93395600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr10:93393800-93396000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr10:93393800-93396000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr10:93394000-93395400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr10:93394000-93396800	Enhancers	Fetal Heart	heart
30	chr10:93394200-93395000	Enhancers	Aorta	Aorta
31	chr10:93394200-93395000	Enhancers	Fetal Lung	lung
32	chr10:93394200-93395000	Weak transcription	NHLF	lung
33	chr10:93394200-93395400	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr10:93394200-93395800	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr10:93394200-93396000	Enhancers	NHDF-Ad	bronchial
36	chr10:93394400-93395400	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr10:93394400-93395600	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr10:93394400-93395600	Enhancers	Stomach Smooth Muscle	stomach
39	chr10:93394800-93395600	Enhancers	Brain Substantia Nigra	brain
40	chr10:93394800-93395800	Enhancers	NH-A	brain
41	chr10:93394800-93396000	Enhancers	HepG2	liver
42	chr10:93394800-93396400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr10:93394800-93396800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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