Variant report

Variant	rs73320170
Chromosome Location	chr10:93376388-93376389
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93325037..93327659-chr10:93375294..93378275,2	K562	blood:
2	chr10:93375188..93376792-chr10:93378413..93380408,2	K562	blood:
3	chr10:93368141..93371067-chr10:93374418..93377017,2	MCF-7	breast:
4	chr10:93371223..93372891-chr10:93374209..93376452,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs2421619	0.80[AFR][1000 genomes]
rs4607983	0.85[AFR][1000 genomes]
rs57609269	1.00[AFR][1000 genomes]
rs58049168	1.00[AFR][1000 genomes]
rs58579342	1.00[AFR][1000 genomes]
rs60276971	0.86[AFR][1000 genomes]
rs60400838	1.00[AFR][1000 genomes]
rs7071663	0.80[AFR][1000 genomes]
rs7087444	0.92[AFR][1000 genomes]
rs7088018	0.92[AFR][1000 genomes]
rs73320159	0.96[AFR][1000 genomes]
rs73320161	1.00[AFR][1000 genomes]
rs73320165	1.00[AFR][1000 genomes]
rs73320172	0.80[AFR][1000 genomes]
rs73320175	1.00[AFR][1000 genomes]
rs73320176	0.88[AFR][1000 genomes]
rs73320178	1.00[AFR][1000 genomes]
rs73320183	1.00[AFR][1000 genomes]
rs73320188	1.00[AFR][1000 genomes]
rs73320195	1.00[AFR][1000 genomes]
rs73320196	1.00[AFR][1000 genomes]
rs73320202	0.92[AFR][1000 genomes]
rs73322006	0.92[AFR][1000 genomes]
rs73322009	0.92[AFR][1000 genomes]
rs73322014	0.92[AFR][1000 genomes]
rs73322017	0.92[AFR][1000 genomes]
rs73322019	0.80[AFR][1000 genomes]
rs73322022	0.80[AFR][1000 genomes]
rs73322023	0.92[AFR][1000 genomes]
rs73322027	0.80[AFR][1000 genomes]
rs73322031	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv551914	chr10:93365015-93384073	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93368000-93388600	Weak transcription	Brain Angular Gyrus	brain
2	chr10:93369000-93387600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:93369400-93378600	Weak transcription	Fetal Intestine Small	intestine
4	chr10:93369400-93379200	Weak transcription	Liver	Liver
5	chr10:93369600-93387800	Weak transcription	Fetal Brain Male	brain
6	chr10:93371200-93376800	Weak transcription	Spleen	Spleen
7	chr10:93371400-93377000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:93371400-93381400	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr10:93371400-93383600	Weak transcription	Ovary	ovary
10	chr10:93371400-93383600	Weak transcription	Right Ventricle	heart
11	chr10:93371400-93386800	Weak transcription	Pancreas	Pancrea
12	chr10:93371600-93377000	Weak transcription	Esophagus	oesophagus
13	chr10:93373600-93379200	Weak transcription	Fetal Lung	lung
14	chr10:93373800-93380800	Weak transcription	Right Atrium	heart
15	chr10:93374000-93376400	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr10:93374000-93381400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr10:93374000-93384800	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr10:93374000-93386200	Weak transcription	Left Ventricle	heart
19	chr10:93374000-93387000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr10:93374200-93377000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr10:93374200-93377000	Weak transcription	Psoas Muscle	Psoas
22	chr10:93374200-93377000	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr10:93374200-93377000	Weak transcription	HSMM	muscle
24	chr10:93374200-93377000	Weak transcription	K562	blood
25	chr10:93374200-93377000	Weak transcription	NHLF	lung
26	chr10:93374200-93383000	Weak transcription	Fetal Heart	heart
27	chr10:93374200-93384000	Weak transcription	Stomach Smooth Muscle	stomach
28	chr10:93374400-93376800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr10:93374400-93376800	Weak transcription	HUVEC	blood vessel
30	chr10:93374400-93377000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr10:93374400-93377000	Weak transcription	Fetal Stomach	stomach
32	chr10:93374400-93377000	Weak transcription	Stomach Mucosa	stomach
33	chr10:93374400-93377000	Weak transcription	HSMMtube	muscle
34	chr10:93374600-93377000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr10:93375000-93377000	Enhancers	Hela-S3	cervix
36	chr10:93375200-93377400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr10:93375400-93377600	Enhancers	NHEK	skin
38	chr10:93375400-93377800	Enhancers	NHDF-Ad	bronchial
39	chr10:93375600-93377000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr10:93375600-93377600	Enhancers	NH-A	brain
41	chr10:93376000-93377000	Enhancers	Muscle Satellite Cultured Cells	--
42	chr10:93376000-93377200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr10:93376000-93377400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr10:93376000-93377600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr10:93376000-93377600	Enhancers	Osteobl	bone
46	chr10:93376200-93376400	Enhancers	Skeletal Muscle Female	skeletal muscle
47	chr10:93376200-93376400	Enhancers	HMEC	breast
48	chr10:93376200-93377600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr10:93376200-93379000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links