Variant report

Variant	rs73322022
Chromosome Location	chr10:93388689-93388690
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93387435..93391591-chr10:93392416..93396501,4	K562	blood:
2	chr10:93384412..93386495-chr10:93387142..93388723,2	K562	blood:
3	chr10:93386300..93388872-chr10:93393581..93396543,2	MCF-7	breast:
4	chr10:93386755..93389232-chr10:93390987..93394775,3	MCF-7	breast:
5	chr10:93387435..93390652-chr10:93392972..93396624,3	K562	blood:
6	chr10:93386594..93389041-chr10:93389303..93393326,7	MCF-7	breast:
7	chr10:93387981..93389630-chr10:93402010..93403622,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119938	Chromatin interaction

rs_ID	r²[population]
rs2421619	1.00[AFR][1000 genomes]
rs4607983	0.81[AFR][1000 genomes]
rs57609269	0.80[AFR][1000 genomes]
rs58049168	0.80[AFR][1000 genomes]
rs58579342	0.80[AFR][1000 genomes]
rs60400838	0.80[AFR][1000 genomes]
rs7087444	0.88[AFR][1000 genomes]
rs7088018	0.88[AFR][1000 genomes]
rs73320161	0.80[AFR][1000 genomes]
rs73320165	0.80[AFR][1000 genomes]
rs73320170	0.80[AFR][1000 genomes]
rs73320172	0.83[AFR][1000 genomes]
rs73320175	0.80[AFR][1000 genomes]
rs73320176	0.91[AFR][1000 genomes]
rs73320178	0.80[AFR][1000 genomes]
rs73320183	0.80[AFR][1000 genomes]
rs73320188	0.80[AFR][1000 genomes]
rs73320195	0.80[AFR][1000 genomes]
rs73320196	0.80[AFR][1000 genomes]
rs73320202	0.88[AFR][1000 genomes]
rs73322006	0.88[AFR][1000 genomes]
rs73322009	0.88[AFR][1000 genomes]
rs73322014	0.88[AFR][1000 genomes]
rs73322017	0.88[AFR][1000 genomes]
rs73322019	1.00[AFR][1000 genomes]
rs73322023	0.88[AFR][1000 genomes]
rs73322027	1.00[AFR][1000 genomes]
rs73322031	0.88[AFR][1000 genomes]

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93377400-93389600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr10:93378600-93389000	Weak transcription	Hela-S3	cervix
3	chr10:93385000-93391800	Weak transcription	NH-A	brain
4	chr10:93385000-93392400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr10:93385400-93389200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr10:93386200-93388800	Strong transcription	Fetal Intestine Large	intestine
7	chr10:93386400-93392600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:93386600-93389400	Weak transcription	Adipose Nuclei	Adipose
9	chr10:93386800-93389600	Genic enhancers	Pancreas	Pancrea
10	chr10:93387000-93392600	Transcr. at gene 5' and 3'	Fetal Lung	lung
11	chr10:93387200-93391400	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr10:93387200-93391800	Weak transcription	Stomach Mucosa	stomach
13	chr10:93387600-93388800	Strong transcription	NHEK	skin
14	chr10:93387600-93389400	Strong transcription	HSMM	muscle
15	chr10:93387600-93390400	Transcr. at gene 5' and 3'	Skeletal Muscle Female	skeletal muscle
16	chr10:93387600-93390600	Transcr. at gene 5' and 3'	Skeletal Muscle Male	skeletal muscle
17	chr10:93387600-93390600	Transcr. at gene 5' and 3'	Stomach Smooth Muscle	stomach
18	chr10:93387600-93390600	Genic enhancers	HepG2	liver
19	chr10:93387600-93391200	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:93387800-93389200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr10:93387800-93389200	Genic enhancers	NHDF-Ad	bronchial
22	chr10:93387800-93390400	Transcr. at gene 5' and 3'	Liver	Liver
23	chr10:93387800-93390800	Transcr. at gene 5' and 3'	Fetal Muscle Leg	muscle
24	chr10:93387800-93391000	Transcr. at gene 5' and 3'	Colon Smooth Muscle	Colon
25	chr10:93387800-93392400	Weak transcription	Placenta	Placenta
26	chr10:93387800-93392600	Weak transcription	Spleen	Spleen
27	chr10:93388000-93388800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr10:93388000-93389000	Active TSS	Fetal Brain Male	brain
29	chr10:93388000-93389000	Strong transcription	Ovary	ovary
30	chr10:93388000-93389200	Weak transcription	Lung	lung
31	chr10:93388000-93389200	Active TSS	Right Ventricle	heart
32	chr10:93388000-93389600	Weak transcription	Esophagus	oesophagus
33	chr10:93388000-93392200	Weak transcription	Gastric	stomach
34	chr10:93388000-93392600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr10:93388000-93393600	Active TSS	Right Atrium	heart
36	chr10:93388200-93388800	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
37	chr10:93388200-93389400	Active TSS	Brain Inferior Temporal Lobe	brain
38	chr10:93388200-93389600	Genic enhancers	Cortex derived primary cultured neurospheres	brain
39	chr10:93388200-93389600	Active TSS	Psoas Muscle	Psoas
40	chr10:93388200-93390200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr10:93388200-93391000	Transcr. at gene 5' and 3'	Osteobl	bone
42	chr10:93388400-93389600	Active TSS	HSMMtube	muscle
43	chr10:93388400-93391000	Transcr. at gene 5' and 3'	Breast Myoepithelial Primary Cells	Breast
44	chr10:93388400-93391200	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
45	chr10:93388400-93391200	Transcr. at gene 5' and 3'	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr10:93388400-93392600	ZNF genes & repeats	Fetal Heart	heart
47	chr10:93388600-93388800	Flanking Active TSS	Fetal Stomach	stomach
48	chr10:93388600-93389000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr10:93388600-93389000	Transcr. at gene 5' and 3'	Brain Anterior Caudate	brain
50	chr10:93388600-93389000	Transcr. at gene 5' and 3'	A549	lung

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