Variant report

Variant	rs73322023
Chromosome Location	chr10:93390801-93390802
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93387435..93391591-chr10:93392416..93396501,4	K562	blood:
2	chr10:93389128..93391072-chr10:93391272..93395365,3	MCF-7	breast:
3	chr10:93383247..93385576-chr10:93389131..93391344,3	MCF-7	breast:
4	chr10:93347950..93349480-chr10:93389392..93391120,2	MCF-7	breast:
5	chr10:93320978..93323661-chr10:93390295..93392458,2	MCF-7	breast:
6	chr10:93168063..93170852-chr10:93390602..93395151,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165338	Chromatin interaction
ENSG00000119938	Chromatin interaction

rs_ID	r²[population]
rs2421619	0.88[AFR][1000 genomes]
rs4607983	0.92[AFR][1000 genomes]
rs57609269	0.92[AFR][1000 genomes]
rs58049168	0.92[AFR][1000 genomes]
rs58579342	0.92[AFR][1000 genomes]
rs60400838	0.92[AFR][1000 genomes]
rs7071663	0.88[AFR][1000 genomes]
rs7087444	1.00[AFR][1000 genomes]
rs7088018	1.00[AFR][1000 genomes]
rs73320159	0.88[AFR][1000 genomes]
rs73320161	0.92[AFR][1000 genomes]
rs73320165	0.92[AFR][1000 genomes]
rs73320170	0.92[AFR][1000 genomes]
rs73320175	0.92[AFR][1000 genomes]
rs73320176	0.80[AFR][1000 genomes]
rs73320178	0.92[AFR][1000 genomes]
rs73320183	0.92[AFR][1000 genomes]
rs73320188	0.92[AFR][1000 genomes]
rs73320195	0.92[AFR][1000 genomes]
rs73320196	0.92[AFR][1000 genomes]
rs73320202	1.00[AFR][1000 genomes]
rs73322006	1.00[AFR][1000 genomes]
rs73322009	1.00[AFR][1000 genomes]
rs73322014	1.00[AFR][1000 genomes]
rs73322017	1.00[AFR][1000 genomes]
rs73322019	0.88[AFR][1000 genomes]
rs73322022	0.88[AFR][1000 genomes]
rs73322027	0.88[AFR][1000 genomes]
rs73322031	1.00[AFR][1000 genomes]

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93385000-93391800	Weak transcription	NH-A	brain
2	chr10:93385000-93392400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr10:93386400-93392600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:93387000-93392600	Transcr. at gene 5' and 3'	Fetal Lung	lung
5	chr10:93387200-93391400	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:93387200-93391800	Weak transcription	Stomach Mucosa	stomach
7	chr10:93387600-93391200	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr10:93387800-93391000	Transcr. at gene 5' and 3'	Colon Smooth Muscle	Colon
9	chr10:93387800-93392400	Weak transcription	Placenta	Placenta
10	chr10:93387800-93392600	Weak transcription	Spleen	Spleen
11	chr10:93388000-93392200	Weak transcription	Gastric	stomach
12	chr10:93388000-93392600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:93388000-93393600	Active TSS	Right Atrium	heart
14	chr10:93388200-93391000	Transcr. at gene 5' and 3'	Osteobl	bone
15	chr10:93388400-93391000	Transcr. at gene 5' and 3'	Breast Myoepithelial Primary Cells	Breast
16	chr10:93388400-93391200	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
17	chr10:93388400-93391200	Transcr. at gene 5' and 3'	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr10:93388400-93392600	ZNF genes & repeats	Fetal Heart	heart
19	chr10:93388600-93391000	Transcr. at gene 5' and 3'	Aorta	Aorta
20	chr10:93388600-93391000	Transcr. at gene 5' and 3'	Fetal Muscle Trunk	muscle
21	chr10:93388600-93391000	Transcr. at gene 5' and 3'	Left Ventricle	heart
22	chr10:93388600-93391200	Transcr. at gene 5' and 3'	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr10:93388600-93391800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr10:93388600-93393600	Active TSS	Brain Angular Gyrus	brain
25	chr10:93388800-93391000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr10:93388800-93393600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
27	chr10:93389000-93391000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr10:93389000-93391200	Weak transcription	Brain Germinal Matrix	brain
29	chr10:93389000-93392600	ZNF genes & repeats	Fetal Brain Male	brain
30	chr10:93389200-93391000	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr10:93389200-93391000	Active TSS	Lung	lung
32	chr10:93389200-93391200	Transcr. at gene 5' and 3'	NHDF-Ad	bronchial
33	chr10:93389200-93391800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr10:93389200-93393000	Active TSS	Duodenum Mucosa	Duodenum
35	chr10:93389400-93391000	Transcr. at gene 5' and 3'	HSMM	muscle
36	chr10:93389400-93393600	Active TSS	Right Ventricle	heart
37	chr10:93389600-93391000	Transcr. at gene 5' and 3'	Psoas Muscle	Psoas
38	chr10:93389600-93391200	Transcr. at gene 5' and 3'	Fetal Stomach	stomach
39	chr10:93389600-93392200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr10:93389800-93391000	Flanking Active TSS	K562	blood
41	chr10:93390000-93391000	Strong transcription	Ovary	ovary
42	chr10:93390000-93391800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr10:93390000-93393400	Active TSS	Brain Anterior Caudate	brain
44	chr10:93390200-93391000	Weak transcription	Brain Cingulate Gyrus	brain
45	chr10:93390200-93391800	Weak transcription	Brain Substantia Nigra	brain
46	chr10:93390200-93393200	Active TSS	Fetal Kidney	kidney
47	chr10:93390400-93391000	Transcr. at gene 5' and 3'	A549	lung
48	chr10:93390400-93391000	Transcr. at gene 5' and 3'	HSMMtube	muscle
49	chr10:93390400-93391200	Transcr. at gene 5' and 3'	NHEK	skin
50	chr10:93390400-93391400	Active TSS	Pancreatic Islets	Pancreatic Islet

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