Variant report

Variant	rs7131582
Chromosome Location	chr11:35295632-35295633
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:35295544..35300568-chr11:35411012..35415613,12	MCF-7	breast:
2	chr11:35295515..35301483-chr11:35383053..35389477,19	MCF-7	breast:
3	chr11:35295425..35298898-chr11:35346407..35348803,4	MCF-7	breast:
4	chr11:35295369..35301669-chr11:35315160..35319353,7	MCF-7	breast:
5	chr11:35279012..35286392-chr11:35294737..35300890,10	MCF-7	breast:
6	chr11:35294411..35297300-chr11:35361479..35363731,2	MCF-7	breast:
7	chr11:35294659..35299259-chr11:35323739..35329418,10	MCF-7	breast:
8	chr11:35279289..35280837-chr11:35295180..35298029,2	MCF-7	breast:
9	chr11:35291446..35293589-chr11:35293877..35296307,2	MCF-7	breast:
10	chr11:35286918..35289513-chr11:35295612..35297896,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000110436	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10671102	1.00[AMR][1000 genomes]
rs12270238	0.81[AFR][1000 genomes]
rs12275544	1.00[AMR][1000 genomes]
rs12276085	0.85[YRI][hapmap]
rs12281679	1.00[AMR][1000 genomes]
rs2281634	0.93[YRI][hapmap];0.82[AFR][1000 genomes]
rs3888947	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs57712008	0.85[AFR][1000 genomes]
rs61618750	1.00[AMR][1000 genomes]
rs7122176	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7938147	1.00[AMR][1000 genomes]
rs7938263	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv541004	chr11:35122694-35297414	Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35265800-35305800	Weak transcription	HepG2	liver
2	chr11:35270400-35296400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr11:35270400-35307000	Weak transcription	Fetal Brain Male	brain
4	chr11:35282200-35297000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:35282200-35297000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr11:35282400-35296600	Weak transcription	Aorta	Aorta
7	chr11:35282600-35296800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr11:35283000-35302000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr11:35284600-35296600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr11:35284600-35300800	Weak transcription	Brain Angular Gyrus	brain
11	chr11:35284800-35296600	Weak transcription	Brain Hippocampus Middle	brain
12	chr11:35285800-35308800	Weak transcription	Gastric	stomach
13	chr11:35287600-35296200	Weak transcription	Liver	Liver
14	chr11:35288800-35297000	Weak transcription	Brain Germinal Matrix	brain
15	chr11:35289600-35296600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr11:35289800-35296600	Weak transcription	NHDF-Ad	bronchial
17	chr11:35290000-35296800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr11:35290400-35296000	Strong transcription	Cortex derived primary cultured neurospheres	brain
19	chr11:35290600-35296800	Weak transcription	NHLF	lung
20	chr11:35291800-35296800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:35293000-35296800	Strong transcription	Fetal Brain Female	brain
22	chr11:35293200-35296000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr11:35293400-35296000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr11:35293600-35296000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr11:35293800-35295800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr11:35294200-35295800	Weak transcription	Duodenum Mucosa	Duodenum
27	chr11:35294600-35296200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr11:35294800-35296400	Weak transcription	Brain Anterior Caudate	brain
29	chr11:35295000-35297000	Weak transcription	Fetal Thymus	thymus
30	chr11:35295000-35298800	Weak transcription	Esophagus	oesophagus
31	chr11:35295200-35298200	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr11:35295200-35298200	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr11:35295400-35296400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr11:35295400-35296600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr11:35295400-35296600	Weak transcription	Pancreas	Pancrea
36	chr11:35295400-35296800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr11:35295400-35297000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr11:35295400-35298000	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr11:35295400-35298800	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr11:35295600-35295800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr11:35295600-35296400	Enhancers	Hela-S3	cervix
42	chr11:35295600-35296600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr11:35295600-35296800	Weak transcription	Primary hematopoietic stem cells	blood

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