Variant report

Variant	rs71511909
Chromosome Location	chr8:49295057-49295058
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr8:49294572-49295059	A549	lung:	n/a	n/a

Variant related genes	Relation type
RPL29P19	TF binding region

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10504064	0.85[EUR][1000 genomes]
rs13256488	0.83[EUR][1000 genomes]
rs13265583	0.85[EUR][1000 genomes]
rs13268764	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13278304	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13279986	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13280598	0.83[EUR][1000 genomes]
rs17624216	0.83[EUR][1000 genomes]
rs17701535	0.85[EUR][1000 genomes]
rs34020503	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34643739	0.83[EUR][1000 genomes]
rs34738967	0.83[EUR][1000 genomes]
rs34821372	0.81[AMR][1000 genomes]
rs35094003	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35106100	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35155538	0.85[EUR][1000 genomes]
rs35197548	0.83[EUR][1000 genomes]
rs35461457	0.83[EUR][1000 genomes]
rs35659888	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35698540	0.83[EUR][1000 genomes]
rs35886671	0.83[EUR][1000 genomes]
rs6987448	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71511910	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71511911	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71511918	0.83[EUR][1000 genomes]
rs71511920	0.83[EUR][1000 genomes]
rs71511921	0.83[EUR][1000 genomes]
rs71511925	0.83[EUR][1000 genomes]
rs7826101	0.85[EUR][1000 genomes]
rs872140	0.85[EUR][1000 genomes]
rs872141	0.85[EUR][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49293600-49295200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr8:49293800-49303000	Weak transcription	Aorta	Aorta
3	chr8:49294200-49296400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:49294600-49296000	Weak transcription	Gastric	stomach
5	chr8:49294600-49296200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr8:49294600-49308400	Weak transcription	Fetal Lung	lung
7	chr8:49294800-49295200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:49294800-49296200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr8:49294800-49296200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr8:49294800-49296400	Weak transcription	HUVEC	blood vessel
11	chr8:49294800-49297400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr8:49294800-49302400	Weak transcription	HSMMtube	muscle
13	chr8:49294800-49308800	Weak transcription	NHLF	lung
14	chr8:49294800-49309600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr8:49295000-49295200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr8:49295000-49295200	Enhancers	Osteobl	bone
17	chr8:49295000-49295400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr8:49295000-49295800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr8:49295000-49296200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr8:49295000-49296400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr8:49295000-49296400	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr8:49295000-49296400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr8:49295000-49296400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr8:49295000-49296600	Weak transcription	NHDF-Ad	bronchial
25	chr8:49295000-49297000	Weak transcription	Fetal Stomach	stomach
26	chr8:49295000-49298200	Strong transcription	Placenta Amnion	Placenta Amnion
27	chr8:49295000-49309000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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