Variant report

Variant	rs35197548
Chromosome Location	chr8:49386641-49386642
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49379288..49382130-chr8:49385329..49388085,3	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10504064	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10504065	0.86[EUR][1000 genomes]
rs13256488	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13265583	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13268764	0.91[EUR][1000 genomes]
rs13278304	0.83[EUR][1000 genomes]
rs13279986	0.83[EUR][1000 genomes]
rs13280598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17624216	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17701535	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34020503	0.94[EUR][1000 genomes]
rs34643739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34738967	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34743445	0.97[EUR][1000 genomes]
rs34907852	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35106100	0.83[EUR][1000 genomes]
rs35155538	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35461457	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35659888	0.83[EUR][1000 genomes]
rs35698540	1.00[EUR][1000 genomes]
rs35803425	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35832338	0.89[EUR][1000 genomes]
rs35886671	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6987448	0.97[EUR][1000 genomes]
rs71511909	0.83[EUR][1000 genomes]
rs71511910	0.83[EUR][1000 genomes]
rs71511911	0.83[EUR][1000 genomes]
rs71511918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71511920	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71511921	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71511925	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71511926	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71511927	0.94[EUR][1000 genomes]
rs71511928	0.94[EUR][1000 genomes]
rs7826101	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs872140	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs872141	0.97[EUR][1000 genomes]
rs964460	0.89[EUR][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49380200-49390400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:49382200-49387200	Enhancers	HMEC	breast
3	chr8:49383000-49386800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:49383400-49386800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr8:49383400-49387000	Enhancers	NHDF-Ad	bronchial
6	chr8:49383600-49386800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr8:49384600-49386800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr8:49384600-49387600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr8:49385800-49386800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr8:49385800-49387000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr8:49385800-49387000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr8:49385800-49387000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr8:49385800-49387800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr8:49386000-49386800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr8:49386000-49386800	Enhancers	NHLF	lung
16	chr8:49386000-49387000	Enhancers	Muscle Satellite Cultured Cells	--
17	chr8:49386000-49387000	Enhancers	Osteobl	bone
18	chr8:49386200-49387000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr8:49386400-49386800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr8:49386400-49386800	Enhancers	Fetal Muscle Leg	muscle
21	chr8:49386400-49386800	Enhancers	Pancreas	Pancrea
22	chr8:49386400-49386800	Enhancers	Placenta Amnion	Placenta Amnion
23	chr8:49386400-49387000	Enhancers	Fetal Kidney	kidney
24	chr8:49386400-49387000	Enhancers	NH-A	brain
25	chr8:49386600-49386800	Enhancers	Fetal Lung	lung
26	chr8:49386600-49387800	Enhancers	Fetal Intestine Large	intestine

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