Variant report

Variant	rs10504065
Chromosome Location	chr8:49484905-49484906
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49484286..49486760-chr8:49487944..49489566,2	MCF-7	breast:
2	chr8:49483172..49485493-chr8:49490422..49492666,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10504064	0.83[EUR][1000 genomes]
rs13250857	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13251934	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13256488	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs13265583	0.83[EUR][1000 genomes]
rs13269670	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13278035	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap]
rs13278304	1.00[AFR][1000 genomes]
rs13279986	1.00[AFR][1000 genomes]
rs13280598	0.86[EUR][1000 genomes]
rs17624216	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs17701535	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs34020503	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs34313379	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34643739	0.86[EUR][1000 genomes]
rs34738967	0.86[EUR][1000 genomes]
rs34743445	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs34907852	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs35155538	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs35197548	0.86[EUR][1000 genomes]
rs35461457	0.86[EUR][1000 genomes]
rs35698540	0.86[EUR][1000 genomes]
rs35803425	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs35832338	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35886671	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6987448	0.83[EUR][1000 genomes]
rs71511910	1.00[AFR][1000 genomes]
rs71511918	0.86[EUR][1000 genomes]
rs71511920	0.86[EUR][1000 genomes]
rs71511921	0.86[EUR][1000 genomes]
rs71511925	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs71511926	0.83[EUR][1000 genomes]
rs71511927	0.92[EUR][1000 genomes]
rs71511928	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs71511931	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7826101	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs872140	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs872141	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs964460	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49477400-49488800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:49477800-49486400	Weak transcription	Ovary	ovary
3	chr8:49482000-49488600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr8:49483000-49490600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr8:49483400-49486000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:49483400-49491400	Weak transcription	NHDF-Ad	bronchial
7	chr8:49483600-49486000	Weak transcription	NHLF	lung
8	chr8:49483600-49489400	Weak transcription	HMEC	breast
9	chr8:49483600-49491600	Weak transcription	HSMM	muscle
10	chr8:49483800-49486000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr8:49484000-49485800	Weak transcription	Fetal Lung	lung
12	chr8:49484000-49486000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr8:49484000-49486200	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr8:49484000-49493000	Weak transcription	NH-A	brain
15	chr8:49484000-49494400	Weak transcription	Lung	lung
16	chr8:49484600-49485200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr8:49484600-49486000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr8:49484600-49486000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr8:49484600-49486400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr8:49484600-49494000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr8:49484800-49485800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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