Variant report

Variant	rs35803425
Chromosome Location	chr8:49432152-49432153
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SRF	chr8:49432083-49432274	GM12878	blood:	n/a	chr8:49432141-49432159 chr8:49432144-49432161 chr8:49432143-49432156 chr8:49432144-49432158 chr8:49432143-49432156 chr8:49432141-49432158 chr8:49432145-49432159 chr8:49432141-49432155 chr8:49432140-49432154 chr8:49432145-49432156 chr8:49432145-49432154 chr8:49432144-49432155 chr8:49432143-49432154 chr8:49432142-49432157

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49368239..49371173-chr8:49430775..49433538,2	K562	blood:

Variant related genes	Relation type
ENSG00000253140	TF binding region

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10504064	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10504065	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs13250857	1.00[AFR][1000 genomes]
rs13256488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13265583	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13268764	0.86[EUR][1000 genomes]
rs13269670	1.00[AFR][1000 genomes]
rs13278304	1.00[AFR][1000 genomes]
rs13279986	1.00[AFR][1000 genomes]
rs13280598	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17624216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17701535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34020503	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs34313379	1.00[AFR][1000 genomes]
rs34643739	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34738967	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34743445	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs34907852	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35155538	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35197548	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35461457	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35698540	0.94[EUR][1000 genomes]
rs35832338	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs35886671	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6987448	0.91[EUR][1000 genomes]
rs71511910	1.00[AFR][1000 genomes]
rs71511918	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71511920	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71511921	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71511925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71511926	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71511927	0.94[EUR][1000 genomes]
rs71511928	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs71511931	1.00[AFR][1000 genomes]
rs7826101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs872140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs872141	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs964460	0.89[EUR][1000 genomes]

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49427600-49432200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:49427600-49433400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:49427800-49435000	Weak transcription	Left Ventricle	heart
4	chr8:49427800-49435000	Weak transcription	Pancreas	Pancrea
5	chr8:49427800-49438200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:49428000-49432200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr8:49428000-49432200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr8:49428000-49433400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr8:49428000-49433400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr8:49428000-49433600	Weak transcription	Esophagus	oesophagus
11	chr8:49428000-49435200	Weak transcription	Aorta	Aorta
12	chr8:49428000-49435200	Weak transcription	Placenta	Placenta
13	chr8:49428000-49435600	Weak transcription	Right Ventricle	heart
14	chr8:49428000-49438400	Weak transcription	Psoas Muscle	Psoas
15	chr8:49428000-49448600	Weak transcription	Right Atrium	heart
16	chr8:49428200-49433200	Weak transcription	NHEK	skin
17	chr8:49428200-49433400	Weak transcription	HMEC	breast
18	chr8:49428200-49433600	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr8:49428200-49435600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr8:49428400-49434000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr8:49428400-49434200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr8:49428400-49438400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr8:49428600-49433600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr8:49428600-49434000	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr8:49428800-49433600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr8:49428800-49433800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr8:49428800-49435000	Weak transcription	NHLF	lung
28	chr8:49428800-49435200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr8:49429000-49433000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr8:49429000-49434800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr8:49429000-49435200	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr8:49429400-49434800	Weak transcription	Fetal Lung	lung
33	chr8:49430000-49435600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr8:49430200-49435800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr8:49430200-49436000	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr8:49430400-49433600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr8:49430400-49435000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr8:49430400-49435200	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr8:49431000-49435400	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr8:49431400-49432400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr8:49431400-49433400	Weak transcription	HSMM	muscle
42	chr8:49431600-49432400	Weak transcription	Primary B cells from peripheral blood	blood
43	chr8:49431600-49433600	Weak transcription	Osteobl	bone
44	chr8:49431600-49434400	Weak transcription	NHDF-Ad	bronchial
45	chr8:49431800-49432400	Enhancers	GM12878-XiMat	blood
46	chr8:49431800-49433400	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr8:49432000-49432600	Enhancers	HUES48 Cell Line	embryonic stem cell
48	chr8:49432000-49432600	Enhancers	iPS-18 Cell Line	embryonic stem cell
49	chr8:49432000-49432800	Enhancers	Fetal Stomach	stomach
50	chr8:49432000-49438800	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links