Variant report

Variant	rs13250857
Chromosome Location	chr8:49496154-49496155
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10504065	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13251934	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13256488	1.00[AFR][1000 genomes]
rs13269670	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13278035	1.00[CHB][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap]
rs13278304	1.00[AFR][1000 genomes]
rs13279986	1.00[AFR][1000 genomes]
rs17624216	1.00[AFR][1000 genomes]
rs17701535	1.00[AFR][1000 genomes]
rs34020503	1.00[AFR][1000 genomes]
rs34313379	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34743445	1.00[AFR][1000 genomes]
rs34907852	1.00[AFR][1000 genomes]
rs35155538	1.00[AFR][1000 genomes]
rs35803425	1.00[AFR][1000 genomes]
rs35832338	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35886671	1.00[AFR][1000 genomes]
rs71511910	1.00[AFR][1000 genomes]
rs71511925	1.00[AFR][1000 genomes]
rs71511927	0.83[EUR][1000 genomes]
rs71511928	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs71511931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7826101	1.00[AFR][1000 genomes]
rs872140	1.00[AFR][1000 genomes]
rs872141	1.00[AFR][1000 genomes]
rs964460	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49486600-49503200	Weak transcription	Esophagus	oesophagus
2	chr8:49492600-49496800	Enhancers	Placenta	Placenta
3	chr8:49492800-49496400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr8:49493000-49496800	Enhancers	NH-A	brain
5	chr8:49493800-49496400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr8:49494000-49496200	Enhancers	Fetal Brain Male	brain
7	chr8:49494000-49496800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:49494000-49496800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr8:49494200-49497600	Enhancers	Fetal Lung	lung
10	chr8:49494400-49496600	Bivalent Enhancer	Fetal Heart	heart
11	chr8:49494400-49496600	Enhancers	Lung	lung
12	chr8:49494400-49496800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr8:49494600-49496200	Enhancers	HSMMtube	muscle
14	chr8:49494600-49496600	Enhancers	Fetal Intestine Small	intestine
15	chr8:49494600-49496800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr8:49494800-49496200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr8:49494800-49496400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr8:49494800-49496400	Enhancers	NHLF	lung
19	chr8:49494800-49496800	Enhancers	Ovary	ovary
20	chr8:49494800-49497800	Enhancers	Fetal Kidney	kidney
21	chr8:49495000-49496200	Enhancers	Fetal Stomach	stomach
22	chr8:49495000-49496600	Enhancers	HSMM	muscle
23	chr8:49495000-49496800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr8:49495000-49496800	Enhancers	Muscle Satellite Cultured Cells	--
25	chr8:49495000-49496800	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr8:49495000-49496800	Enhancers	Osteobl	bone
27	chr8:49495000-49497400	Enhancers	Fetal Muscle Trunk	muscle
28	chr8:49495000-49504600	Enhancers	Fetal Muscle Leg	muscle
29	chr8:49495200-49496600	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr8:49495200-49496800	Enhancers	Adipose Nuclei	Adipose
31	chr8:49495400-49496400	Enhancers	Fetal Intestine Large	intestine
32	chr8:49495400-49496800	Enhancers	Placenta Amnion	Placenta Amnion
33	chr8:49495600-49496400	Weak transcription	Colonic Mucosa	Colon
34	chr8:49495600-49496400	Weak transcription	Colon Smooth Muscle	Colon
35	chr8:49495600-49496400	Enhancers	Small Intestine	intestine
36	chr8:49495600-49496600	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr8:49495600-49496800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr8:49495600-49498400	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr8:49495600-49501400	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr8:49495600-49519000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr8:49495800-49496200	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr8:49495800-49496200	Enhancers	iPS-18 Cell Line	embryonic stem cell
43	chr8:49495800-49496200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr8:49495800-49496200	Weak transcription	Left Ventricle	heart
45	chr8:49495800-49496400	Flanking Active TSS	NHDF-Ad	bronchial
46	chr8:49495800-49496600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr8:49495800-49501200	Weak transcription	Aorta	Aorta
48	chr8:49495800-49503000	Weak transcription	Right Ventricle	heart
49	chr8:49496000-49496200	Enhancers	ES-I3 Cell Line	embryonic stem cell
50	chr8:49496000-49496400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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