Variant report

Variant	rs35832338
Chromosome Location	chr8:49460322-49460323
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr8:49460269-49460749	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr8:49460251-49460881	MCF10A-Er-Src	breast:	n/a	chr8:49460721-49460732 chr8:49460596-49460605

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49426670..49428318-chr8:49459036..49461539,2	K562	blood:

Variant related genes	Relation type
ENSG00000253608	TF binding region

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10504064	0.86[EUR][1000 genomes]
rs10504065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13250857	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13256488	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs13265583	0.86[EUR][1000 genomes]
rs13268764	0.80[EUR][1000 genomes]
rs13269670	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13278304	1.00[AFR][1000 genomes]
rs13279986	1.00[AFR][1000 genomes]
rs13280598	0.89[EUR][1000 genomes]
rs17624216	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs17701535	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs34020503	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs34313379	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34643739	0.89[EUR][1000 genomes]
rs34738967	0.89[EUR][1000 genomes]
rs34743445	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs34907852	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs35155538	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs35197548	0.89[EUR][1000 genomes]
rs35461457	0.89[EUR][1000 genomes]
rs35698540	0.89[EUR][1000 genomes]
rs35803425	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs35886671	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6987448	0.86[EUR][1000 genomes]
rs71511910	1.00[AFR][1000 genomes]
rs71511918	0.89[EUR][1000 genomes]
rs71511920	0.89[EUR][1000 genomes]
rs71511921	0.89[EUR][1000 genomes]
rs71511925	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs71511926	0.86[EUR][1000 genomes]
rs71511927	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71511928	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71511931	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7826101	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs872140	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs872141	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs964460	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49455400-49460600	Weak transcription	HMEC	breast
2	chr8:49455400-49462800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:49455400-49462800	Weak transcription	Right Ventricle	heart
4	chr8:49455800-49467800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr8:49456400-49461800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr8:49456400-49463400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr8:49456600-49462800	Weak transcription	NHLF	lung
8	chr8:49457000-49467000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr8:49457200-49465400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr8:49457200-49466200	Weak transcription	Fetal Kidney	kidney
11	chr8:49457400-49460800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr8:49457400-49462400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr8:49457400-49463400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr8:49457600-49462800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr8:49457600-49462800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr8:49457600-49462800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr8:49457600-49462800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr8:49457600-49462800	Weak transcription	NHDF-Ad	bronchial
19	chr8:49457600-49462800	Weak transcription	Osteobl	bone
20	chr8:49457600-49463400	Weak transcription	Adipose Nuclei	Adipose
21	chr8:49457600-49467400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr8:49457600-49468600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr8:49457800-49462200	Weak transcription	Fetal Lung	lung
24	chr8:49458000-49462000	Weak transcription	Ovary	ovary
25	chr8:49458000-49462800	Weak transcription	Lung	lung
26	chr8:49458400-49462400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr8:49458400-49462600	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr8:49458400-49462800	Weak transcription	Spleen	Spleen
29	chr8:49458600-49462000	Weak transcription	Fetal Stomach	stomach
30	chr8:49458600-49462600	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr8:49458600-49462600	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr8:49458600-49462800	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr8:49458600-49462800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr8:49458600-49462800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr8:49458600-49462800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr8:49458600-49462800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr8:49458600-49466800	Weak transcription	Pancreas	Pancrea
38	chr8:49459000-49461800	Weak transcription	Fetal Muscle Trunk	muscle
39	chr8:49459000-49462600	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr8:49459200-49462800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr8:49460000-49462000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr8:49460200-49461400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr8:49460200-49461800	Weak transcription	Fetal Muscle Leg	muscle

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