Variant report

Variant	rs17624216
Chromosome Location	chr8:49412646-49412647
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49410603..49416175-chr8:49423365..49428715,9	MCF-7	breast:
2	chr8:49378548..49381243-chr8:49411191..49413752,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10504064	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10504065	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs13250857	1.00[AFR][1000 genomes]
rs13256488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13265583	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13268764	0.91[EUR][1000 genomes]
rs13269670	1.00[AFR][1000 genomes]
rs13278304	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs13279986	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs13280598	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17701535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34020503	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs34313379	1.00[AFR][1000 genomes]
rs34643739	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34738967	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34743445	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs34907852	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35106100	0.83[EUR][1000 genomes]
rs35155538	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35197548	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35461457	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35659888	0.83[EUR][1000 genomes]
rs35698540	1.00[EUR][1000 genomes]
rs35803425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35832338	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs35886671	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6987448	0.97[EUR][1000 genomes]
rs71511909	0.83[EUR][1000 genomes]
rs71511910	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs71511911	0.83[EUR][1000 genomes]
rs71511918	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71511920	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71511921	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71511925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71511926	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71511927	0.94[EUR][1000 genomes]
rs71511928	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs71511931	1.00[AFR][1000 genomes]
rs7826101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs872140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs872141	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs964460	0.89[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17624216	LPHN2	trans	lymphoblastoid	seeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49407000-49413800	Weak transcription	NH-A	brain
2	chr8:49407200-49413400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr8:49407200-49413400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr8:49407200-49413400	Weak transcription	A549	lung
5	chr8:49407400-49413400	Weak transcription	Osteobl	bone
6	chr8:49409200-49413400	Weak transcription	Esophagus	oesophagus
7	chr8:49411800-49412800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links