Variant report

Variant	rs7174890
Chromosome Location	chr15:51991748-51991749
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:51991056..51992762-chr15:51996758..51999094,2	K562	blood:
2	chr15:51990726..51993605-chr15:51996321..51998740,2	MCF-7	breast:
3	chr15:51990868..51993765-chr15:52043379..52046034,2	K562	blood:
4	chr15:51984283..51986352-chr15:51990636..51992962,2	K562	blood:
5	chr15:51981798..51984182-chr15:51989191..51992186,3	K562	blood:
6	chr15:51990309..51992367-chr15:51994326..51996049,2	K562	blood:
7	chr15:51984106..51987260-chr15:51989301..51991929,3	MCF-7	breast:
8	chr15:51991390..51994698-chr15:51996190..51998071,3	K562	blood:
9	chr15:51990243..51992728-chr15:52432911..52434531,2	K562	blood:
10	chr15:51976555..51979151-chr15:51989814..51992249,2	MCF-7	breast:
11	chr15:51989710..51992600-chr15:52007020..52010215,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000259296	Chromatin interaction
ENSG00000069966	Chromatin interaction
ENSG00000140280	Chromatin interaction
ENSG00000128872	Chromatin interaction
ENSG00000259377	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12101851	1.00[AMR][1000 genomes]
rs56246647	1.00[AMR][1000 genomes]
rs56392335	1.00[AMR][1000 genomes]
rs57155911	1.00[AMR][1000 genomes]
rs58735105	1.00[AMR][1000 genomes]
rs59861752	1.00[AMR][1000 genomes]
rs61514213	1.00[AMR][1000 genomes]
rs61628696	1.00[AMR][1000 genomes]
rs74013274	1.00[AMR][1000 genomes]
rs74013281	1.00[AMR][1000 genomes]
rs74013294	1.00[AMR][1000 genomes]
rs74013295	1.00[AMR][1000 genomes]
rs74013296	1.00[AMR][1000 genomes]
rs74013297	1.00[AMR][1000 genomes]
rs74013300	1.00[AMR][1000 genomes]
rs74013301	1.00[AMR][1000 genomes]
rs74013497	1.00[AMR][1000 genomes]
rs74013501	1.00[AMR][1000 genomes]
rs74013502	1.00[AMR][1000 genomes]
rs74015704	1.00[AMR][1000 genomes]
rs74015707	1.00[AMR][1000 genomes]
rs74015710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74016403	1.00[AMR][1000 genomes]
rs74016405	1.00[AMR][1000 genomes]
rs74016406	1.00[AMR][1000 genomes]
rs74016411	1.00[AMR][1000 genomes]
rs74016412	1.00[AMR][1000 genomes]
rs74016423	1.00[AMR][1000 genomes]
rs8024353	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471243	chr15:51345485-52018096	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1035967	chr15:51949866-52008736	Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51974200-52018800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:51974400-52005200	Weak transcription	Brain Anterior Caudate	brain
3	chr15:51974600-52016400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr15:51975000-51993200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr15:51975200-51998400	Weak transcription	Brain Angular Gyrus	brain
6	chr15:51975600-52017200	Weak transcription	Fetal Brain Male	brain
7	chr15:51982200-51996600	Strong transcription	Fetal Brain Female	brain
8	chr15:51983000-52013200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr15:51983400-51998400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr15:51984600-51992600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr15:51984800-52018600	Weak transcription	Brain Hippocampus Middle	brain
12	chr15:51985400-51992000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr15:51986000-51998400	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr15:51989600-51993800	Strong transcription	Brain Germinal Matrix	brain
15	chr15:51990000-52016800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr15:51990200-51994200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr15:51990400-51992000	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr15:51990400-51997600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
19	chr15:51990600-51993600	Strong transcription	Brain Inferior Temporal Lobe	brain
20	chr15:51990800-51992000	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr15:51990800-51992200	Strong transcription	H9 Cell Line	embryonic stem cell
22	chr15:51991000-51994200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr15:51991000-51994600	Weak transcription	K562	blood
24	chr15:51991400-52018800	Weak transcription	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links