Variant report

Variant	rs58735105
Chromosome Location	chr15:51956525-51956526
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:51955426..51957385-chr15:51970284..51973757,3	K562	blood:

Variant related genes	Relation type
ENSG00000104112	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12101851	1.00[AMR][1000 genomes]
rs56246647	1.00[AMR][1000 genomes]
rs56392335	1.00[AMR][1000 genomes]
rs57155911	1.00[AMR][1000 genomes]
rs59861752	1.00[AMR][1000 genomes]
rs61514213	1.00[AMR][1000 genomes]
rs61628696	1.00[AMR][1000 genomes]
rs7174890	1.00[AMR][1000 genomes]
rs74013273	1.00[AMR][1000 genomes]
rs74013274	1.00[AMR][1000 genomes]
rs74013281	1.00[AMR][1000 genomes]
rs74013294	1.00[AMR][1000 genomes]
rs74013295	1.00[AMR][1000 genomes]
rs74013296	1.00[AMR][1000 genomes]
rs74013297	1.00[AMR][1000 genomes]
rs74013300	1.00[AMR][1000 genomes]
rs74013301	1.00[AMR][1000 genomes]
rs74013497	1.00[AMR][1000 genomes]
rs74013501	1.00[AMR][1000 genomes]
rs74013502	1.00[AMR][1000 genomes]
rs74015704	1.00[AMR][1000 genomes]
rs74015707	1.00[AMR][1000 genomes]
rs74015710	1.00[AMR][1000 genomes]
rs74016403	1.00[AMR][1000 genomes]
rs74016405	1.00[AMR][1000 genomes]
rs74016406	1.00[AMR][1000 genomes]
rs74016411	1.00[AMR][1000 genomes]
rs74016412	1.00[AMR][1000 genomes]
rs74016423	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8024353	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471243	chr15:51345485-52018096	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv904219	chr15:51851999-51977159	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
3	nsv457139	chr15:51854718-51977159	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
4	nsv569407	chr15:51854718-51977159	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
5	nsv1035967	chr15:51949866-52008736	Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links