Variant report

Variant	rs56246647
Chromosome Location	chr15:51804671-51804672
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:51799531..51802188-chr15:51804343..51807032,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12101851	1.00[AMR][1000 genomes]
rs56392335	1.00[AMR][1000 genomes]
rs57155911	1.00[AMR][1000 genomes]
rs58735105	1.00[AMR][1000 genomes]
rs59861752	1.00[AMR][1000 genomes]
rs61514213	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61628696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7174890	1.00[AMR][1000 genomes]
rs74013204	1.00[AMR][1000 genomes]
rs74013206	1.00[AMR][1000 genomes]
rs74013208	1.00[AMR][1000 genomes]
rs74013273	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013274	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013281	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013294	1.00[AMR][1000 genomes]
rs74013295	1.00[AMR][1000 genomes]
rs74013296	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013297	1.00[AMR][1000 genomes]
rs74013300	1.00[AMR][1000 genomes]
rs74013301	1.00[AMR][1000 genomes]
rs74013497	1.00[AMR][1000 genomes]
rs74013501	1.00[AMR][1000 genomes]
rs74013502	1.00[AMR][1000 genomes]
rs74015704	1.00[AMR][1000 genomes]
rs74015707	1.00[AMR][1000 genomes]
rs74015710	1.00[AMR][1000 genomes]
rs74016403	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74016405	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74016406	1.00[AMR][1000 genomes]
rs74016411	1.00[AMR][1000 genomes]
rs74016412	1.00[AMR][1000 genomes]
rs74016423	1.00[AMR][1000 genomes]
rs8024353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758382	chr15:51282257-51830339	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv2760031	chr15:51282257-51830339	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv471243	chr15:51345485-52018096	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv904217	chr15:51695653-51881980	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv904218	chr15:51743186-51873407	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv569405	chr15:51791559-51890282	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51763600-51826800	Weak transcription	Colonic Mucosa	Colon
2	chr15:51776800-51815600	Weak transcription	Aorta	Aorta
3	chr15:51776800-51837600	Weak transcription	Fetal Thymus	thymus
4	chr15:51776800-51855200	Weak transcription	Thymus	Thymus
5	chr15:51777600-51819000	Weak transcription	Small Intestine	intestine
6	chr15:51778200-51811200	Weak transcription	NHDF-Ad	bronchial
7	chr15:51778400-51825800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr15:51778800-51813400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr15:51780400-51817600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr15:51780400-51855800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:51780800-51839000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr15:51781200-51816600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr15:51781400-51863000	Weak transcription	HSMM	muscle
14	chr15:51781600-51817400	Weak transcription	Brain Angular Gyrus	brain
15	chr15:51781600-51837000	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr15:51785000-51827400	Weak transcription	Brain Cingulate Gyrus	brain
17	chr15:51787200-51818400	Weak transcription	Primary T cells from cord blood	blood
18	chr15:51787400-51806600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr15:51787400-51807600	Weak transcription	Liver	Liver
20	chr15:51787400-51855400	Weak transcription	Osteobl	bone
21	chr15:51791800-51807400	Weak transcription	Fetal Brain Female	brain
22	chr15:51791800-51816800	Weak transcription	Lung	lung
23	chr15:51791800-51816800	Weak transcription	Rectal Smooth Muscle	rectum
24	chr15:51792000-51817200	Weak transcription	Ovary	ovary
25	chr15:51792000-51817600	Weak transcription	Fetal Brain Male	brain
26	chr15:51792000-51819000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr15:51792200-51809000	Weak transcription	Fetal Muscle Leg	muscle
28	chr15:51792200-51815600	Weak transcription	Stomach Smooth Muscle	stomach
29	chr15:51792200-51816400	Weak transcription	Brain Germinal Matrix	brain
30	chr15:51792200-51816600	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr15:51792200-51816800	Weak transcription	Fetal Intestine Large	intestine
32	chr15:51792200-51817000	Weak transcription	Brain Anterior Caudate	brain
33	chr15:51792200-51817000	Weak transcription	Fetal Lung	lung
34	chr15:51792200-51817000	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr15:51792200-51817200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr15:51792200-51817400	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr15:51792200-51817400	Weak transcription	A549	lung
38	chr15:51792200-51817800	Weak transcription	Primary hematopoietic stem cells	blood
39	chr15:51792200-51824000	Weak transcription	Fetal Kidney	kidney
40	chr15:51792200-51824000	Weak transcription	Left Ventricle	heart
41	chr15:51792400-51807200	Weak transcription	Adipose Nuclei	Adipose
42	chr15:51792400-51809000	Weak transcription	Colon Smooth Muscle	Colon
43	chr15:51792400-51816600	Weak transcription	Fetal Muscle Trunk	muscle
44	chr15:51792400-51819000	Weak transcription	Duodenum Mucosa	Duodenum
45	chr15:51792400-51819400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr15:51792400-51828600	Weak transcription	K562	blood
47	chr15:51792400-51838400	Weak transcription	HSMMtube	muscle
48	chr15:51792600-51817600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr15:51793000-51824000	Weak transcription	Dnd41	blood
50	chr15:51793800-51816800	Weak transcription	Rectal Mucosa Donor 31	rectum

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