Variant report

Variant	rs74013273
Chromosome Location	chr15:51772124-51772125
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:51770845..51772566-chr15:51776340..51779147,2	MCF-7	breast:
2	chr15:51762215..51767323-chr15:51771205..51773538,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104093	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12101851	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28757112	1.00[AMR][1000 genomes]
rs28757115	1.00[AMR][1000 genomes]
rs56246647	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56392335	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57155911	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58735105	1.00[AMR][1000 genomes]
rs59861752	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60375627	1.00[AMR][1000 genomes]
rs61514213	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61628696	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013191	1.00[AMR][1000 genomes]
rs74013204	1.00[AMR][1000 genomes]
rs74013206	1.00[AMR][1000 genomes]
rs74013208	1.00[AMR][1000 genomes]
rs74013274	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013281	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013294	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013295	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013296	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013297	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013300	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013301	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013497	1.00[AMR][1000 genomes]
rs74013501	1.00[AMR][1000 genomes]
rs74013502	1.00[AMR][1000 genomes]
rs74015704	1.00[AMR][1000 genomes]
rs74015707	1.00[AMR][1000 genomes]
rs74016403	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74016405	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74016406	1.00[AMR][1000 genomes]
rs74016407	0.83[AFR][1000 genomes]
rs74016411	1.00[AMR][1000 genomes]
rs74016412	1.00[AMR][1000 genomes]
rs74016423	1.00[AMR][1000 genomes]
rs8024353	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758382	chr15:51282257-51830339	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv2760031	chr15:51282257-51830339	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv471243	chr15:51345485-52018096	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	esv2757600	chr15:51352249-51783981	Weak transcription Bivalent Enhancer Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv904217	chr15:51695653-51881980	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv904218	chr15:51743186-51873407	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51737000-51775600	Strong transcription	Primary monocytes fromperipheralblood	blood
2	chr15:51737000-51776400	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr15:51738200-51784600	Weak transcription	Stomach Mucosa	stomach
4	chr15:51738400-51777400	Weak transcription	Small Intestine	intestine
5	chr15:51739000-51776000	Weak transcription	Gastric	stomach
6	chr15:51740800-51775200	Weak transcription	Pancreas	Pancrea
7	chr15:51742400-51775800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr15:51742600-51775400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr15:51742600-51775400	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr15:51742600-51776000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr15:51742600-51776600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr15:51742600-51776800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr15:51743000-51774200	Weak transcription	HMEC	breast
14	chr15:51743000-51775200	Weak transcription	HSMMtube	muscle
15	chr15:51743000-51780200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr15:51748000-51776400	Weak transcription	Right Ventricle	heart
17	chr15:51748200-51774400	Weak transcription	Fetal Heart	heart
18	chr15:51749000-51776600	Weak transcription	Fetal Kidney	kidney
19	chr15:51749200-51772800	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr15:51749200-51775400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr15:51749200-51777400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr15:51749600-51775000	Weak transcription	Fetal Intestine Small	intestine
23	chr15:51750400-51775400	Weak transcription	Brain Substantia Nigra	brain
24	chr15:51750800-51776200	Weak transcription	NHDF-Ad	bronchial
25	chr15:51750800-51776600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr15:51750800-51777400	Weak transcription	Osteobl	bone
27	chr15:51751000-51776200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr15:51751000-51777400	Weak transcription	NHLF	lung
29	chr15:51751200-51777200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr15:51751800-51775200	Weak transcription	Fetal Lung	lung
31	chr15:51751800-51776400	Weak transcription	Rectal Smooth Muscle	rectum
32	chr15:51751800-51777400	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr15:51752000-51775000	Weak transcription	Ovary	ovary
34	chr15:51752600-51772400	Weak transcription	K562	blood
35	chr15:51754400-51777400	Weak transcription	Colon Smooth Muscle	Colon
36	chr15:51762400-51773400	Weak transcription	GM12878-XiMat	blood
37	chr15:51762800-51775000	Weak transcription	Fetal Stomach	stomach
38	chr15:51763000-51775000	Weak transcription	Brain Cingulate Gyrus	brain
39	chr15:51763000-51775600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr15:51763000-51776600	Weak transcription	Primary T cells from cord blood	blood
41	chr15:51763200-51775000	Weak transcription	Aorta	Aorta
42	chr15:51763200-51775000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr15:51763200-51775000	Weak transcription	Fetal Brain Female	brain
44	chr15:51763200-51775200	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr15:51763200-51775200	Weak transcription	Spleen	Spleen
46	chr15:51763200-51775400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr15:51763200-51775400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr15:51763200-51775400	Weak transcription	Fetal Muscle Leg	muscle
49	chr15:51763200-51776400	Weak transcription	Brain Anterior Caudate	brain
50	chr15:51763200-51777400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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