Variant report

Variant	rs12101851
Chromosome Location	chr15:51848827-51848828
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:51846158..51849118-chr15:51859655..51862008,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10220907	0.84[ASN][1000 genomes]
rs2271677	1.00[JPT][hapmap]
rs2305718	1.00[CHB][hapmap]
rs3214015	1.00[CHB][hapmap]
rs56246647	1.00[AMR][1000 genomes]
rs56392335	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57155911	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58735105	1.00[AMR][1000 genomes]
rs59861752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60490752	0.93[ASN][1000 genomes]
rs61514213	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61628696	1.00[AMR][1000 genomes]
rs7167954	0.84[ASN][1000 genomes]
rs7172287	0.90[ASN][1000 genomes]
rs7172619	0.86[ASN][1000 genomes]
rs7174890	1.00[AMR][1000 genomes]
rs72729245	0.84[ASN][1000 genomes]
rs74013204	1.00[AMR][1000 genomes]
rs74013206	1.00[AMR][1000 genomes]
rs74013208	1.00[AMR][1000 genomes]
rs74013273	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013274	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013281	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013295	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74013296	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013297	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74013300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013301	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013497	1.00[AMR][1000 genomes]
rs74013501	1.00[AMR][1000 genomes]
rs74013502	1.00[AMR][1000 genomes]
rs74015704	1.00[AMR][1000 genomes]
rs74015707	1.00[AMR][1000 genomes]
rs74015710	1.00[AMR][1000 genomes]
rs74016403	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74016405	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74016406	1.00[AMR][1000 genomes]
rs74016411	1.00[AMR][1000 genomes]
rs74016412	1.00[AMR][1000 genomes]
rs74016423	1.00[AMR][1000 genomes]
rs8024353	1.00[AMR][1000 genomes]
rs8025629	0.84[ASN][1000 genomes]
rs8028658	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8037082	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471243	chr15:51345485-52018096	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv904217	chr15:51695653-51881980	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv904218	chr15:51743186-51873407	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv569405	chr15:51791559-51890282	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv457138	chr15:51838719-51890282	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv569406	chr15:51838719-51890282	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51776800-51855200	Weak transcription	Thymus	Thymus
2	chr15:51780400-51855800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr15:51781400-51863000	Weak transcription	HSMM	muscle
4	chr15:51787400-51855400	Weak transcription	Osteobl	bone
5	chr15:51794600-51861000	Weak transcription	Gastric	stomach
6	chr15:51809000-51854800	Weak transcription	Brain Hippocampus Middle	brain
7	chr15:51816000-51861000	Weak transcription	Pancreas	Pancrea
8	chr15:51817800-51862200	Weak transcription	Fetal Brain Male	brain
9	chr15:51818200-51855400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr15:51818200-51861600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr15:51818400-51853400	Weak transcription	Lung	lung
12	chr15:51818400-51861200	Weak transcription	Fetal Stomach	stomach
13	chr15:51819400-51852600	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr15:51819400-51853400	Weak transcription	Ovary	ovary
15	chr15:51819600-51853400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr15:51819600-51861400	Weak transcription	Fetal Muscle Trunk	muscle
17	chr15:51819800-51863000	Weak transcription	Right Ventricle	heart
18	chr15:51822000-51849400	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr15:51824400-51854200	Weak transcription	Fetal Kidney	kidney
20	chr15:51824600-51855000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr15:51824600-51860600	Weak transcription	Brain Anterior Caudate	brain
22	chr15:51824600-51861000	Weak transcription	Left Ventricle	heart
23	chr15:51824800-51863200	Weak transcription	Primary hematopoietic stem cells	blood
24	chr15:51826000-51853400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr15:51827000-51861600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr15:51827400-51859800	Weak transcription	Fetal Intestine Small	intestine
27	chr15:51828600-51861200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr15:51828800-51868000	Weak transcription	Adipose Nuclei	Adipose
29	chr15:51828800-51868200	Weak transcription	Fetal Intestine Large	intestine
30	chr15:51829000-51853400	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr15:51829000-51855200	Weak transcription	Stomach Smooth Muscle	stomach
32	chr15:51829000-51856000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr15:51829000-51857000	Weak transcription	NHDF-Ad	bronchial
34	chr15:51829000-51859800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr15:51829000-51861000	Weak transcription	Fetal Lung	lung
36	chr15:51829000-51868800	Weak transcription	A549	lung
37	chr15:51829200-51861000	Weak transcription	Placenta	Placenta
38	chr15:51829400-51860600	Weak transcription	Fetal Brain Female	brain
39	chr15:51829400-51863200	Weak transcription	Dnd41	blood
40	chr15:51830000-51861000	Weak transcription	K562	blood
41	chr15:51831400-51868800	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr15:51836400-51861400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr15:51836600-51853400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr15:51836800-51849600	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr15:51836800-51850000	Weak transcription	Duodenum Mucosa	Duodenum
46	chr15:51836800-51858000	Weak transcription	Liver	Liver
47	chr15:51836800-51869000	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr15:51839400-51868600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr15:51846600-51861000	Weak transcription	HepG2	liver
50	chr15:51848200-51849800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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