Variant report

Variant	rs7175442
Chromosome Location	chr15:76522982-76522983
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:76515156..76518708-chr15:76522074..76525565,3	K562	blood:

Variant related genes	Relation type
ENSG00000140374	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1047357	0.92[AFR][1000 genomes]
rs11856470	0.85[AFR][1000 genomes]
rs11857880	0.83[AFR][1000 genomes]
rs59691037	0.88[AFR][1000 genomes]
rs60060261	0.84[AFR][1000 genomes]
rs62027007	0.83[AFR][1000 genomes]
rs62027010	0.83[AFR][1000 genomes]
rs62027014	0.83[AFR][1000 genomes]
rs62027016	0.83[AFR][1000 genomes]
rs7166675	0.95[AFR][1000 genomes]
rs7167004	0.94[AFR][1000 genomes]
rs72736888	0.83[AFR][1000 genomes]
rs72736892	0.83[AFR][1000 genomes]
rs8033926	0.97[AFR][1000 genomes]
rs8038885	0.84[AFR][1000 genomes]
rs8042654	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569998	chr15:76232605-76550938	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv833057	chr15:76367848-76585868	ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	esv3409846	chr15:76521947-76523995	Weak transcription Strong transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76492800-76526400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr15:76493600-76526400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr15:76499200-76527400	Weak transcription	Fetal Brain Male	brain
4	chr15:76500600-76534800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr15:76501200-76524200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr15:76503600-76551400	Weak transcription	Small Intestine	intestine
7	chr15:76506000-76526800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:76506200-76526800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr15:76506400-76525600	Weak transcription	Fetal Brain Female	brain
10	chr15:76507200-76551400	Weak transcription	Brain Hippocampus Middle	brain
11	chr15:76508000-76525000	Weak transcription	NHLF	lung
12	chr15:76508000-76525400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr15:76508400-76546000	Weak transcription	Brain Anterior Caudate	brain
14	chr15:76508600-76525200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr15:76510000-76523000	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr15:76510000-76534600	Weak transcription	Brain Substantia Nigra	brain
17	chr15:76510200-76526000	Weak transcription	Brain Cingulate Gyrus	brain
18	chr15:76510200-76555400	Weak transcription	Psoas Muscle	Psoas
19	chr15:76510400-76523600	Weak transcription	HMEC	breast
20	chr15:76510400-76538000	Weak transcription	HUVEC	blood vessel
21	chr15:76510400-76538200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr15:76510400-76555000	Weak transcription	NH-A	brain
23	chr15:76511800-76525400	Strong transcription	Liver	Liver
24	chr15:76512000-76525400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr15:76512000-76525600	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr15:76513200-76559400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr15:76513400-76524800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr15:76513600-76523800	Strong transcription	Primary T helper cells fromperipheralblood	blood
29	chr15:76513800-76551400	Weak transcription	Stomach Mucosa	stomach
30	chr15:76514200-76525000	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr15:76514800-76525000	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr15:76515200-76523800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr15:76515800-76523600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr15:76516400-76550600	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr15:76517200-76551800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr15:76517400-76523000	Weak transcription	Lung	lung
37	chr15:76517400-76532600	Weak transcription	HSMM	muscle
38	chr15:76517400-76544600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr15:76517400-76549200	Weak transcription	Fetal Kidney	kidney
40	chr15:76517400-76550600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr15:76517400-76550600	Weak transcription	Pancreas	Pancrea
42	chr15:76517400-76559400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr15:76517600-76523000	Weak transcription	Colonic Mucosa	Colon
44	chr15:76517600-76523000	Weak transcription	NHEK	skin
45	chr15:76517600-76523200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr15:76517600-76523200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr15:76517600-76526000	Weak transcription	Rectal Smooth Muscle	rectum
48	chr15:76517600-76526200	Weak transcription	Brain Germinal Matrix	brain
49	chr15:76517600-76526800	Weak transcription	Esophagus	oesophagus
50	chr15:76517600-76528000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links