Variant report

Variant	rs62027016
Chromosome Location	chr15:76583008-76583009
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:76572935..76575613-chr15:76581006..76583216,3	K562	blood:
2	chr15:76582923..76594852-chr15:76601949..76606997,18	MCF-7	breast:
3	chr15:76577914..76580283-chr15:76582309..76584434,2	K562	blood:
4	chr15:76573019..76575613-chr15:76581006..76583116,2	K562	blood:

Variant related genes	Relation type
ENSG00000140374	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1047357	0.90[AFR][1000 genomes]
rs11854972	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11856470	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11857880	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2469208	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55831300	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55923544	0.84[AMR][1000 genomes]
rs56220133	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56233972	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56313024	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59691037	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60060261	0.92[AFR][1000 genomes]
rs60261704	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027004	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027007	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027019	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027054	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027059	0.86[EUR][1000 genomes]
rs62030172	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62030183	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62030184	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030186	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030187	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030191	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030230	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62030234	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030240	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495195	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7166675	0.82[AFR][1000 genomes]
rs7167004	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7175022	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7175442	0.83[AFR][1000 genomes]
rs72736846	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72736862	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72736888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72736892	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8033926	0.80[AFR][1000 genomes]
rs8038885	0.82[AFR][1000 genomes]
rs8042654	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833057	chr15:76367848-76585868	ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76555800-76586000	Weak transcription	Stomach Mucosa	stomach
2	chr15:76556800-76594600	Weak transcription	Esophagus	oesophagus
3	chr15:76558000-76603000	Weak transcription	Aorta	Aorta
4	chr15:76561000-76587600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr15:76562000-76591600	Weak transcription	Small Intestine	intestine
6	chr15:76562600-76586000	Weak transcription	Brain Angular Gyrus	brain
7	chr15:76563000-76586400	Weak transcription	Fetal Heart	heart
8	chr15:76563200-76590800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr15:76569000-76585200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr15:76569000-76586400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr15:76569400-76583600	Strong transcription	Hela-S3	cervix
12	chr15:76569400-76585000	Strong transcription	Fetal Intestine Large	intestine
13	chr15:76569800-76591600	Weak transcription	Spleen	Spleen
14	chr15:76571200-76586400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr15:76572600-76585800	Weak transcription	Brain Anterior Caudate	brain
16	chr15:76573200-76592200	Weak transcription	Fetal Kidney	kidney
17	chr15:76573200-76593200	Weak transcription	Right Ventricle	heart
18	chr15:76574600-76585200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr15:76574800-76590600	Weak transcription	Ovary	ovary
20	chr15:76574800-76591600	Weak transcription	Gastric	stomach
21	chr15:76574800-76591600	Weak transcription	Lung	lung
22	chr15:76574800-76601400	Weak transcription	Pancreas	Pancrea
23	chr15:76574800-76602000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr15:76575000-76586000	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr15:76575800-76585200	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr15:76575800-76585200	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr15:76576000-76585200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr15:76576000-76585600	Weak transcription	HUVEC	blood vessel
29	chr15:76576000-76585800	Weak transcription	Brain Hippocampus Middle	brain
30	chr15:76576200-76602800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr15:76576400-76586200	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr15:76576600-76585800	Weak transcription	NH-A	brain
33	chr15:76577400-76585400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr15:76579000-76586000	Weak transcription	Brain Cingulate Gyrus	brain
35	chr15:76579200-76584400	Weak transcription	A549	lung
36	chr15:76579200-76585600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr15:76579200-76586000	Weak transcription	Brain Substantia Nigra	brain
38	chr15:76579200-76586200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr15:76579200-76591600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr15:76579200-76602000	Weak transcription	Thymus	Thymus
41	chr15:76579400-76585600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr15:76579400-76585800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr15:76579400-76586200	Weak transcription	Rectal Smooth Muscle	rectum
44	chr15:76579400-76587200	Weak transcription	NHLF	lung
45	chr15:76579400-76591000	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr15:76579400-76592600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr15:76579400-76592800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr15:76579600-76585600	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr15:76579600-76586000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr15:76579600-76587200	Weak transcription	Psoas Muscle	Psoas

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