Variant report

Variant	rs62027007
Chromosome Location	chr15:76567328-76567329
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:76554323..76556286-chr15:76566730..76568876,2	K562	blood:
2	chr15:76565967..76567680-chr15:76602088..76604380,2	K562	blood:

Variant related genes	Relation type
ENSG00000140374	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1047357	0.90[AFR][1000 genomes]
rs11854972	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11856470	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11857880	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2469208	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55831300	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55923544	0.84[AMR][1000 genomes]
rs56220133	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56233972	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56313024	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59691037	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60060261	0.92[AFR][1000 genomes]
rs60261704	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027004	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027019	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027054	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027059	0.86[EUR][1000 genomes]
rs62030172	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62030183	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62030184	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030186	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030187	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030191	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030230	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62030234	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030240	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495195	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7166675	0.82[AFR][1000 genomes]
rs7167004	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7175022	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7175442	0.83[AFR][1000 genomes]
rs72736846	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72736862	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72736888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72736892	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8033926	0.80[AFR][1000 genomes]
rs8038885	0.82[AFR][1000 genomes]
rs8042654	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833057	chr15:76367848-76585868	ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76550600-76578400	Strong transcription	Liver	Liver
2	chr15:76555800-76574200	Strong transcription	Primary T cells fromperipheralblood	blood
3	chr15:76555800-76578800	Weak transcription	Psoas Muscle	Psoas
4	chr15:76555800-76579000	Weak transcription	NHLF	lung
5	chr15:76555800-76586000	Weak transcription	Stomach Mucosa	stomach
6	chr15:76556200-76569800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr15:76556400-76581400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr15:76556800-76594600	Weak transcription	Esophagus	oesophagus
9	chr15:76557000-76582800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr15:76557600-76573400	Strong transcription	Rectal Mucosa Donor 31	rectum
11	chr15:76558000-76603000	Weak transcription	Aorta	Aorta
12	chr15:76558400-76568200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr15:76560000-76582400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr15:76560200-76578600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr15:76560600-76567600	Strong transcription	A549	lung
16	chr15:76561000-76567600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr15:76561000-76567600	Strong transcription	Rectal Mucosa Donor 29	rectum
18	chr15:76561000-76567600	Strong transcription	Sigmoid Colon	Sigmoid Colon
19	chr15:76561000-76569400	Weak transcription	Spleen	Spleen
20	chr15:76561000-76570400	Weak transcription	Colon Smooth Muscle	Colon
21	chr15:76561000-76574200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr15:76561000-76574800	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr15:76561000-76576200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr15:76561000-76580400	Strong transcription	Adipose Nuclei	Adipose
25	chr15:76561000-76587600	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr15:76561200-76567800	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr15:76561200-76578400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr15:76561400-76570200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr15:76561400-76578800	Strong transcription	Duodenum Mucosa	Duodenum
30	chr15:76561600-76574200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr15:76562000-76573200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr15:76562000-76591600	Weak transcription	Small Intestine	intestine
33	chr15:76562600-76569400	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr15:76562600-76574600	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr15:76562600-76586000	Weak transcription	Brain Angular Gyrus	brain
36	chr15:76562800-76569200	Weak transcription	Lung	lung
37	chr15:76562800-76571600	Weak transcription	Colonic Mucosa	Colon
38	chr15:76562800-76574400	Weak transcription	Brain Substantia Nigra	brain
39	chr15:76562800-76580600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr15:76563000-76567600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr15:76563000-76569200	Weak transcription	Fetal Kidney	kidney
42	chr15:76563000-76570200	Weak transcription	NH-A	brain
43	chr15:76563000-76570400	Weak transcription	Fetal Brain Female	brain
44	chr15:76563000-76570600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr15:76563000-76571000	Weak transcription	Brain Anterior Caudate	brain
46	chr15:76563000-76574400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr15:76563000-76577000	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr15:76563000-76578200	Weak transcription	Brain Cingulate Gyrus	brain
49	chr15:76563000-76578400	Strong transcription	Primary B cells from peripheral blood	blood
50	chr15:76563000-76579200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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