Variant report

Variant	rs7238080
Chromosome Location	chr18:12631685-12631686
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 138 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:132)

rs_ID	r²[population]
rs10401097	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11080585	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11080586	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11080590	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11659510	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11659854	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11663958	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11664404	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11664765	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11664861	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11664914	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11664917	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11664927	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11664936	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11665543	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12326271	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12454931	0.90[ASN][1000 genomes]
rs12455536	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12455892	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12455909	0.91[ASN][1000 genomes]
rs12604184	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12604385	0.86[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs12604400	0.83[ASN][1000 genomes]
rs12604402	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12604541	0.94[ASN][1000 genomes]
rs12605240	0.90[ASN][1000 genomes]
rs12605392	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12606465	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12606482	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12606506	0.87[ASN][1000 genomes]
rs12709540	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12953578	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12954614	0.82[ASN][1000 genomes]
rs12956133	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12956385	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12956885	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12957048	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12957151	0.82[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs12957688	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs12958200	0.90[ASN][1000 genomes]
rs12959015	0.87[ASN][1000 genomes]
rs12960150	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12961695	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12962476	0.91[ASN][1000 genomes]
rs12963179	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs12963325	0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs12965094	0.87[ASN][1000 genomes]
rs12965733	0.81[AFR][1000 genomes]
rs12966246	0.82[AFR][1000 genomes]
rs12969567	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12970025	0.94[ASN][1000 genomes]
rs12970174	0.81[ASN][1000 genomes]
rs1592642	0.81[AFR][1000 genomes]
rs1864532	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1893193	0.86[ASN][1000 genomes]
rs1940974	0.90[ASN][1000 genomes]
rs1940975	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2155698	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2186907	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28414067	0.93[ASN][1000 genomes]
rs28457089	0.87[ASN][1000 genomes]
rs28496036	0.86[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs28582228	0.94[ASN][1000 genomes]
rs28647784	0.84[ASN][1000 genomes]
rs28886423	0.91[ASN][1000 genomes]
rs34072260	0.87[ASN][1000 genomes]
rs34814556	0.85[ASN][1000 genomes]
rs34899007	0.87[ASN][1000 genomes]
rs35122110	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35449211	0.86[ASN][1000 genomes]
rs35630805	0.92[ASN][1000 genomes]
rs4389196	0.91[ASN][1000 genomes]
rs4627434	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4629035	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62097094	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62097102	0.81[ASN][1000 genomes]
rs62097103	0.82[ASN][1000 genomes]
rs62097126	0.90[ASN][1000 genomes]
rs62097148	0.92[ASN][1000 genomes]
rs62097149	0.90[ASN][1000 genomes]
rs62097152	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62097153	0.94[ASN][1000 genomes]
rs67045810	0.94[ASN][1000 genomes]
rs70964152	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs722708	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7234697	0.84[ASN][1000 genomes]
rs7237732	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs723836	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7238546	0.94[ASN][1000 genomes]
rs7242395	0.88[ASN][1000 genomes]
rs7504857	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs755020	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs755021	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8086094	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8086099	0.82[AFR][1000 genomes]
rs8087885	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs8088786	0.94[ASN][1000 genomes]
rs8089081	0.89[ASN][1000 genomes]
rs8089115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8093129	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8093532	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8093571	0.81[ASN][1000 genomes]
rs8094172	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs8095160	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8096455	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9303772	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9303773	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs948301	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs948302	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs948303	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9675543	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9945339	0.91[ASN][1000 genomes]
rs9947738	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9948505	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9948618	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9949582	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9951147	0.90[ASN][1000 genomes]
rs9954054	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9954419	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9958409	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9958666	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9959759	0.90[ASN][1000 genomes]
rs9960824	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9961705	0.80[ASN][1000 genomes]
rs9961799	0.81[AFR][1000 genomes]
rs9961851	0.91[ASN][1000 genomes]
rs9964759	0.92[ASN][1000 genomes]
rs9965123	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9967123	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9989496	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9989506	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9989568	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063125	chr18:12046892-12918251	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	130 gene(s)	inside rSNPs	diseases
2	nsv491873	chr18:12159445-12739784	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
3	esv3528039	chr18:12396582-12851293	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	esv3528041	chr18:12396641-12851245	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
5	nsv523743	chr18:12474505-12742809	Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv962958	chr18:12626598-12636297	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:12597800-12634600	Weak transcription	Aorta	Aorta
2	chr18:12602200-12638400	Weak transcription	Fetal Brain Female	brain
3	chr18:12607000-12640200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr18:12607800-12651800	Weak transcription	Brain Germinal Matrix	brain
5	chr18:12616400-12640400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr18:12616400-12644800	Weak transcription	Brain Hippocampus Middle	brain
7	chr18:12616600-12645200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr18:12621200-12645200	Weak transcription	Fetal Muscle Leg	muscle
9	chr18:12622800-12645000	Weak transcription	Brain Angular Gyrus	brain
10	chr18:12624000-12637600	Weak transcription	Left Ventricle	heart
11	chr18:12625400-12640400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr18:12626600-12640600	Weak transcription	Lung	lung
13	chr18:12627800-12631800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr18:12629800-12632000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr18:12629800-12638400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr18:12629800-12640400	Weak transcription	HSMMtube	muscle
17	chr18:12630000-12632800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr18:12630200-12632800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr18:12630400-12632000	Weak transcription	Fetal Stomach	stomach
20	chr18:12630400-12645400	Weak transcription	Ovary	ovary
21	chr18:12630800-12637600	Weak transcription	HMEC	breast
22	chr18:12630800-12637600	Weak transcription	NH-A	brain
23	chr18:12630800-12640600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr18:12631000-12632200	Enhancers	K562	blood
25	chr18:12631000-12632800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr18:12631000-12637200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr18:12631000-12637400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr18:12631000-12637600	Weak transcription	HSMM	muscle
29	chr18:12631000-12638000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr18:12631000-12638600	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr18:12631000-12640400	Weak transcription	Stomach Smooth Muscle	stomach
32	chr18:12631000-12645200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr18:12631000-12645200	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr18:12631200-12632800	Weak transcription	HUVEC	blood vessel
35	chr18:12631200-12633000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr18:12631200-12633200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr18:12631200-12633200	Weak transcription	NHEK	skin
38	chr18:12631200-12633600	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr18:12631200-12636800	Weak transcription	Osteobl	bone
40	chr18:12631200-12637200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr18:12631200-12637400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr18:12631200-12637800	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr18:12631200-12640400	Weak transcription	Brain Cingulate Gyrus	brain
44	chr18:12631200-12647800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr18:12631400-12645200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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