Variant report

Variant rs11080585
Chromosome Location chr18:12589240-12589241
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:21 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr18:12570000-12595600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr18:12587000-12592600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr18:12587800-12596800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
4 chr18:12588000-12595400 Weak transcription Fetal Heart heart
5 chr18:12588600-12589800 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
6 chr18:12588600-12589800 Enhancers Brain Hippocampus Middle brain
7 chr18:12588600-12589800 Enhancers Brain Substantia Nigra brain
8 chr18:12588600-12589800 Enhancers HepG2 liver
9 chr18:12588600-12590800 Enhancers Liver Liver
10 chr18:12588600-12591400 Enhancers Fetal Adrenal Gland Adrenal Gland
11 chr18:12588800-12589800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
12 chr18:12588800-12590000 Enhancers Cortex derived primary cultured neurospheres brain
13 chr18:12588800-12595800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
14 chr18:12589000-12589600 Enhancers Brain Anterior Caudate brain
15 chr18:12589200-12589400 Weak transcription Fetal Kidney kidney
16 chr18:12589200-12589600 Enhancers Aorta Aorta
17 chr18:12589200-12589600 Enhancers Brain Inferior Temporal Lobe brain
18 chr18:12589200-12589600 Enhancers Fetal Brain Female brain
19 chr18:12589200-12589800 Flanking Active TSS Pancreatic Islets Pancreatic Islet
20 chr18:12589200-12589800 Enhancers Left Ventricle heart
21 chr18:12589200-12589800 Enhancers Pancreas Pancrea

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