Variant report

Variant rs7245557
Chromosome Location chr19:57028659-57028660
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:49 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:57020200-57029800 Weak transcription Gastric stomach
2 chr19:57020400-57030400 Weak transcription Right Ventricle heart
3 chr19:57020600-57028800 Weak transcription Fetal Stomach stomach
4 chr19:57022600-57042800 ZNF genes & repeats Liver Liver
5 chr19:57022800-57031200 Strong transcription Skeletal Muscle Male skeletal muscle
6 chr19:57022800-57049200 ZNF genes & repeats Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
7 chr19:57023000-57037400 ZNF genes & repeats Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
8 chr19:57023400-57029800 Weak transcription Primary T helper naive cells fromperipheralblood blood
9 chr19:57024200-57030400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
10 chr19:57024400-57038800 ZNF genes & repeats Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
11 chr19:57025400-57029600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
12 chr19:57025600-57038200 ZNF genes & repeats Ganglion Eminence derived primary cultured neurospheres brain
13 chr19:57025600-57049200 ZNF genes & repeats Adipose Nuclei Adipose
14 chr19:57025800-57030600 Weak transcription Pancreas Pancrea
15 chr19:57025800-57031200 Weak transcription Esophagus oesophagus
16 chr19:57026000-57040200 ZNF genes & repeats Brain Inferior Temporal Lobe brain
17 chr19:57026200-57029600 Weak transcription Rectal Smooth Muscle rectum
18 chr19:57026200-57031400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
19 chr19:57027000-57029800 Weak transcription Fetal Brain Male brain
20 chr19:57027200-57035800 ZNF genes & repeats Fetal Adrenal Gland Adrenal Gland
21 chr19:57027200-57038600 ZNF genes & repeats Ovary ovary
22 chr19:57027400-57034400 ZNF genes & repeats Fetal Lung lung
23 chr19:57027400-57040800 ZNF genes & repeats Brain Hippocampus Middle brain
24 chr19:57027800-57029400 Weak transcription Muscle Satellite Cultured Cells --
25 chr19:57027800-57029600 Weak transcription Osteobl bone
26 chr19:57028000-57029400 Weak transcription Placenta Amnion Placenta Amnion
27 chr19:57028000-57029600 Weak transcription Colon Smooth Muscle Colon
28 chr19:57028000-57029600 Weak transcription NHDF-Ad bronchial
29 chr19:57028000-57029800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
30 chr19:57028000-57029800 Weak transcription Rectal Mucosa Donor 29 rectum
31 chr19:57028000-57030400 Weak transcription Dnd41 blood
32 chr19:57028200-57029000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
33 chr19:57028200-57029200 Weak transcription Brain Cingulate Gyrus brain
34 chr19:57028200-57029600 Weak transcription Brain Angular Gyrus brain
35 chr19:57028200-57029600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
36 chr19:57028200-57029800 Weak transcription Brain Germinal Matrix brain
37 chr19:57028200-57029800 Weak transcription Placenta Placenta
38 chr19:57028200-57030800 Strong transcription Skeletal Muscle Female skeletal muscle
39 chr19:57028400-57029000 Weak transcription Left Ventricle heart
40 chr19:57028400-57029200 Weak transcription Brain Substantia Nigra brain
41 chr19:57028400-57029400 Weak transcription Duodenum Smooth Muscle Duodenum
42 chr19:57028400-57029600 Weak transcription Cortex derived primary cultured neurospheres brain
43 chr19:57028400-57029600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
44 chr19:57028400-57029600 Weak transcription Duodenum Mucosa Duodenum
45 chr19:57028400-57029600 Weak transcription Fetal Brain Female brain
46 chr19:57028400-57029600 Weak transcription Fetal Muscle Trunk muscle
47 chr19:57028400-57029600 Weak transcription Stomach Smooth Muscle stomach
48 chr19:57028400-57029600 Weak transcription HSMM muscle
49 chr19:57028400-57030400 Weak transcription Rectal Mucosa Donor 31 rectum

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