Variant report

Variant	rs72699278
Chromosome Location	chr14:84458594-84458595
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10484123	0.93[EUR][1000 genomes]
rs17119411	0.93[EUR][1000 genomes]
rs17119414	0.93[EUR][1000 genomes]
rs17119419	0.93[EUR][1000 genomes]
rs17119425	0.93[EUR][1000 genomes]
rs17119427	0.93[EUR][1000 genomes]
rs17119428	0.93[EUR][1000 genomes]
rs17119435	0.93[EUR][1000 genomes]
rs17119438	0.93[EUR][1000 genomes]
rs17119440	0.93[EUR][1000 genomes]
rs17119443	0.93[EUR][1000 genomes]
rs2372555	0.93[EUR][1000 genomes]
rs2372557	0.93[EUR][1000 genomes]
rs2372558	0.93[EUR][1000 genomes]
rs2372559	0.93[EUR][1000 genomes]
rs4258535	0.93[EUR][1000 genomes]
rs4343201	0.93[EUR][1000 genomes]
rs4502139	0.93[EUR][1000 genomes]
rs4562984	0.93[EUR][1000 genomes]
rs56109438	0.93[EUR][1000 genomes]
rs57204377	0.93[EUR][1000 genomes]
rs57308756	0.93[EUR][1000 genomes]
rs59534087	0.93[EUR][1000 genomes]
rs60430639	0.93[EUR][1000 genomes]
rs72699253	1.00[AMR][1000 genomes]
rs72699257	0.81[EUR][1000 genomes]
rs72699260	0.86[EUR][1000 genomes]
rs72699265	0.86[EUR][1000 genomes]
rs72699271	1.00[AMR][1000 genomes]
rs72699280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72699290	0.93[EUR][1000 genomes]
rs72699293	0.93[EUR][1000 genomes]
rs72699294	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72699295	0.93[EUR][1000 genomes]
rs72699297	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72699300	0.93[EUR][1000 genomes]
rs72701003	0.93[EUR][1000 genomes]
rs72701006	0.93[EUR][1000 genomes]
rs72701011	0.93[EUR][1000 genomes]
rs72701012	0.93[EUR][1000 genomes]
rs72701014	0.93[EUR][1000 genomes]
rs72701015	0.93[EUR][1000 genomes]
rs72701016	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72701018	0.93[EUR][1000 genomes]
rs72701019	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72701023	0.93[EUR][1000 genomes]
rs72701024	0.93[EUR][1000 genomes]
rs72701025	0.93[EUR][1000 genomes]
rs72701026	0.93[EUR][1000 genomes]
rs72701027	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72701029	0.93[EUR][1000 genomes]
rs72701030	0.86[EUR][1000 genomes]
rs72701031	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72701032	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72701034	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72701040	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72701043	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72701071	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72703212	1.00[AMR][1000 genomes]
rs8004309	0.93[EUR][1000 genomes]
rs8004623	0.93[EUR][1000 genomes]
rs8004926	0.93[EUR][1000 genomes]
rs8009976	0.93[EUR][1000 genomes]
rs8010352	0.93[EUR][1000 genomes]
rs8010667	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039271	chr14:84405561-84467550	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv974291	chr14:84447572-84460362	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84457600-84460000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr14:84458400-84458600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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