Variant report

Variant	rs72701368
Chromosome Location	chr9:21417681-21417682
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10114286	0.83[EUR][1000 genomes]
rs10121687	0.80[EUR][1000 genomes]
rs10125532	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12000461	0.85[AMR][1000 genomes]
rs12002231	0.85[AMR][1000 genomes]
rs12340196	0.80[EUR][1000 genomes]
rs1330321	0.83[EUR][1000 genomes]
rs28383780	0.85[AMR][1000 genomes]
rs28383791	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28383792	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35000944	0.85[AMR][1000 genomes]
rs35353365	0.85[AMR][1000 genomes]
rs41270127	0.85[AMR][1000 genomes]
rs41270131	0.85[AMR][1000 genomes]
rs41270133	0.85[AMR][1000 genomes]
rs6475532	0.85[AMR][1000 genomes]
rs7037805	0.85[AMR][1000 genomes]
rs72691656	0.85[AMR][1000 genomes]
rs72691682	0.85[AMR][1000 genomes]
rs72691685	0.85[AMR][1000 genomes]
rs72691699	0.85[AMR][1000 genomes]
rs72691700	0.85[AMR][1000 genomes]
rs72691701	0.85[AMR][1000 genomes]
rs72691942	0.85[AMR][1000 genomes]
rs72691948	0.85[AMR][1000 genomes]
rs72693703	0.85[AMR][1000 genomes]
rs72693705	0.85[AMR][1000 genomes]
rs72695780	0.85[AMR][1000 genomes]
rs72695784	0.85[AMR][1000 genomes]
rs72695785	0.85[AMR][1000 genomes]
rs72695788	0.85[AMR][1000 genomes]
rs72695798	0.85[AMR][1000 genomes]
rs72697305	0.85[AMR][1000 genomes]
rs72697307	0.85[AMR][1000 genomes]
rs72697312	0.85[AMR][1000 genomes]
rs72697313	0.85[AMR][1000 genomes]
rs72697314	0.85[AMR][1000 genomes]
rs72697315	0.85[AMR][1000 genomes]
rs72697317	0.85[AMR][1000 genomes]
rs72697321	0.85[AMR][1000 genomes]
rs72697322	0.85[AMR][1000 genomes]
rs72697326	0.85[AMR][1000 genomes]
rs72697327	0.85[AMR][1000 genomes]
rs72699198	0.85[AMR][1000 genomes]
rs72701303	0.85[AMR][1000 genomes]
rs72701314	0.85[AMR][1000 genomes]
rs72701344	0.80[EUR][1000 genomes]
rs72701345	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72701355	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72701357	0.83[EUR][1000 genomes]
rs72701366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892724	chr9:20690244-21517302	Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
2	esv2752289	chr9:21361957-21499624	Weak transcription Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv466297	chr9:21391698-21507589	Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv613758	chr9:21391698-21507589	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv892739	chr9:21407250-21470520	Weak transcription Bivalent Enhancer ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21412800-21417800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:21414800-21420200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:21415800-21420200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:21416000-21419000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr9:21416000-21419000	Weak transcription	Muscle Satellite Cultured Cells	--

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