Variant report

Variant	rs72695798
Chromosome Location	chr9:21323201-21323202
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10114175	0.92[EUR][1000 genomes]
rs10125532	0.85[AMR][1000 genomes]
rs11999696	0.89[EUR][1000 genomes]
rs12000461	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12002231	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12336789	0.92[EUR][1000 genomes]
rs12340718	0.92[EUR][1000 genomes]
rs17334047	0.92[EUR][1000 genomes]
rs17334054	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17334061	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28383773	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28383780	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28383791	1.00[AMR][1000 genomes]
rs28383792	1.00[AMR][1000 genomes]
rs28627173	0.84[EUR][1000 genomes]
rs35000944	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35101870	0.92[EUR][1000 genomes]
rs35353365	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs41270127	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs41270129	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs41270131	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs41270133	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs41270135	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6475532	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7029860	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7037805	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72691656	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72691682	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72691685	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72691698	0.87[EUR][1000 genomes]
rs72691699	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72691700	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72691701	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72691917	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72691933	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72691934	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72691936	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72691937	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72691939	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72691942	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72691948	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72693703	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72693705	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72695780	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72695784	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72695785	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72695788	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72695795	1.00[EUR][1000 genomes]
rs72695797	1.00[EUR][1000 genomes]
rs72695801	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72697305	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72697307	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72697311	0.94[EUR][1000 genomes]
rs72697312	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72697313	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72697314	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72697315	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72697317	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72697321	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72697322	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72697324	0.92[EUR][1000 genomes]
rs72697326	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72697327	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72699197	0.92[EUR][1000 genomes]
rs72699198	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72699199	0.92[EUR][1000 genomes]
rs72699200	0.92[EUR][1000 genomes]
rs72699201	0.92[EUR][1000 genomes]
rs72699202	0.92[EUR][1000 genomes]
rs72701303	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72701305	0.92[EUR][1000 genomes]
rs72701306	0.92[EUR][1000 genomes]
rs72701307	0.92[EUR][1000 genomes]
rs72701308	0.92[EUR][1000 genomes]
rs72701309	0.92[EUR][1000 genomes]
rs72701311	0.92[EUR][1000 genomes]
rs72701312	0.92[EUR][1000 genomes]
rs72701313	0.92[EUR][1000 genomes]
rs72701314	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72701315	0.92[EUR][1000 genomes]
rs72701316	0.92[EUR][1000 genomes]
rs72701317	0.92[EUR][1000 genomes]
rs72701318	0.92[EUR][1000 genomes]
rs72701319	0.92[EUR][1000 genomes]
rs72701320	0.92[EUR][1000 genomes]
rs72701321	0.89[EUR][1000 genomes]
rs72701345	1.00[AMR][1000 genomes]
rs72701355	1.00[AMR][1000 genomes]
rs72701366	0.85[AMR][1000 genomes]
rs72701368	0.85[AMR][1000 genomes]
rs7862030	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7863385	0.94[EUR][1000 genomes]
rs7865334	1.00[EUR][1000 genomes]
rs9333356	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892724	chr9:20690244-21517302	Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21316600-21330600	Weak transcription	Small Intestine	intestine
2	chr9:21317000-21326800	Weak transcription	Hela-S3	cervix
3	chr9:21317200-21331600	Weak transcription	Esophagus	oesophagus
4	chr9:21317200-21331600	Weak transcription	Gastric	stomach
5	chr9:21318200-21330000	Weak transcription	Brain Anterior Caudate	brain
6	chr9:21318200-21330400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr9:21318800-21324000	Weak transcription	NHEK	skin
8	chr9:21318800-21326800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr9:21318800-21326800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr9:21318800-21330600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr9:21318800-21331000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr9:21318800-21331200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr9:21318800-21331800	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr9:21318800-21332600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr9:21318800-21332800	Weak transcription	Fetal Kidney	kidney
16	chr9:21319000-21326000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr9:21319000-21326800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr9:21319000-21332200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr9:21319000-21333200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr9:21319400-21329400	Weak transcription	Fetal Heart	heart
21	chr9:21319600-21333200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr9:21319800-21326000	Weak transcription	Fetal Brain Male	brain
23	chr9:21320000-21324600	Strong transcription	Primary T cells from cord blood	blood
24	chr9:21320000-21325600	Weak transcription	Rectal Smooth Muscle	rectum
25	chr9:21320200-21326400	Strong transcription	HSMM	muscle
26	chr9:21320600-21323800	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr9:21320600-21324400	Strong transcription	Liver	Liver
28	chr9:21320600-21326000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr9:21320600-21326200	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr9:21320600-21331600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr9:21320800-21326200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr9:21321000-21326800	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr9:21321200-21324000	Strong transcription	Placenta	Placenta
34	chr9:21321200-21324200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr9:21321200-21324200	Strong transcription	Colon Smooth Muscle	Colon
36	chr9:21321200-21324200	Strong transcription	Fetal Thymus	thymus
37	chr9:21321200-21324400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
38	chr9:21321200-21324400	Strong transcription	Primary B cells from cord blood	blood
39	chr9:21321200-21324400	Strong transcription	Primary T helper cells PMA-I stimulated	--
40	chr9:21321200-21324400	Strong transcription	Brain Hippocampus Middle	brain
41	chr9:21321200-21324800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr9:21321200-21324800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr9:21321200-21324800	Strong transcription	Adipose Nuclei	Adipose
44	chr9:21321200-21324800	Strong transcription	Fetal Muscle Trunk	muscle
45	chr9:21321200-21324800	Strong transcription	Fetal Muscle Leg	muscle
46	chr9:21321200-21325000	Strong transcription	Fetal Brain Female	brain
47	chr9:21321200-21325000	Strong transcription	Fetal Intestine Small	intestine
48	chr9:21321200-21325200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr9:21321200-21326000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr9:21321400-21323600	Weak transcription	HUVEC	blood vessel

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