Variant report

Variant	rs9333356
Chromosome Location	chr9:21352377-21352378
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:21333378..21336066-chr9:21351386..21353061,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198642	Chromatin interaction

Extended variants
information (count: 91 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10114175	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10114286	0.83[TSI][hapmap]
rs10114825	1.00[CEU][hapmap]
rs10121687	0.81[EUR][1000 genomes]
rs11999696	0.97[EUR][1000 genomes]
rs12000461	0.92[EUR][1000 genomes]
rs12002231	0.84[EUR][1000 genomes]
rs12006448	1.00[CEU][hapmap]
rs12336789	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12337907	1.00[CEU][hapmap]
rs12340196	0.81[EUR][1000 genomes]
rs12340718	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1330321	0.83[TSI][hapmap]
rs16938346	1.00[ASW][hapmap]
rs16938347	0.84[ASW][hapmap]
rs17334047	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28383780	0.97[EUR][1000 genomes]
rs35000944	0.97[EUR][1000 genomes]
rs35101870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35353365	1.00[EUR][1000 genomes]
rs3919593	1.00[CEU][hapmap];0.83[TSI][hapmap]
rs41270127	0.97[EUR][1000 genomes]
rs41270129	0.97[EUR][1000 genomes]
rs41270131	0.97[EUR][1000 genomes]
rs41270133	0.97[EUR][1000 genomes]
rs41270135	0.97[EUR][1000 genomes]
rs6475532	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7037805	0.84[EUR][1000 genomes]
rs72691656	0.89[EUR][1000 genomes]
rs72691682	0.84[EUR][1000 genomes]
rs72691685	0.84[EUR][1000 genomes]
rs72691699	0.84[EUR][1000 genomes]
rs72691700	0.84[EUR][1000 genomes]
rs72691701	0.84[EUR][1000 genomes]
rs72691939	0.81[EUR][1000 genomes]
rs72691942	0.81[EUR][1000 genomes]
rs72691948	0.81[EUR][1000 genomes]
rs72693703	0.84[EUR][1000 genomes]
rs72693705	0.84[EUR][1000 genomes]
rs72695780	0.92[EUR][1000 genomes]
rs72695784	0.92[EUR][1000 genomes]
rs72695785	0.92[EUR][1000 genomes]
rs72695788	0.92[EUR][1000 genomes]
rs72695795	0.92[EUR][1000 genomes]
rs72695797	0.92[EUR][1000 genomes]
rs72695798	0.92[EUR][1000 genomes]
rs72695801	0.97[EUR][1000 genomes]
rs72697305	0.97[EUR][1000 genomes]
rs72697307	0.97[EUR][1000 genomes]
rs72697311	0.97[EUR][1000 genomes]
rs72697312	0.97[EUR][1000 genomes]
rs72697313	0.97[EUR][1000 genomes]
rs72697314	0.97[EUR][1000 genomes]
rs72697315	0.97[EUR][1000 genomes]
rs72697317	0.97[EUR][1000 genomes]
rs72697321	1.00[EUR][1000 genomes]
rs72697322	1.00[EUR][1000 genomes]
rs72697324	1.00[EUR][1000 genomes]
rs72697326	1.00[EUR][1000 genomes]
rs72697327	1.00[EUR][1000 genomes]
rs72699197	1.00[EUR][1000 genomes]
rs72699198	1.00[EUR][1000 genomes]
rs72699199	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72699200	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72699201	1.00[EUR][1000 genomes]
rs72699202	1.00[EUR][1000 genomes]
rs72701303	1.00[EUR][1000 genomes]
rs72701305	1.00[EUR][1000 genomes]
rs72701306	1.00[EUR][1000 genomes]
rs72701307	1.00[EUR][1000 genomes]
rs72701308	1.00[EUR][1000 genomes]
rs72701309	1.00[EUR][1000 genomes]
rs72701311	1.00[EUR][1000 genomes]
rs72701312	1.00[EUR][1000 genomes]
rs72701313	1.00[EUR][1000 genomes]
rs72701314	1.00[EUR][1000 genomes]
rs72701315	1.00[EUR][1000 genomes]
rs72701316	1.00[EUR][1000 genomes]
rs72701317	1.00[EUR][1000 genomes]
rs72701318	1.00[EUR][1000 genomes]
rs72701319	1.00[EUR][1000 genomes]
rs72701320	1.00[EUR][1000 genomes]
rs72701321	0.97[EUR][1000 genomes]
rs72701344	0.81[EUR][1000 genomes]
rs72701345	0.81[EUR][1000 genomes]
rs7862030	1.00[CEU][hapmap];0.92[TSI][hapmap];1.00[EUR][1000 genomes]
rs7863385	1.00[CEU][hapmap];0.91[TSI][hapmap];0.97[EUR][1000 genomes]
rs7865334	0.92[EUR][1000 genomes]
rs9333355	1.00[CEU][hapmap];0.91[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892724	chr9:20690244-21517302	Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
2	nsv892736	chr9:21327141-21391698	Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9333356	KLHL9	Cis_1M	lymphoblastoid	RTeQTL
rs9333356	KLHL9	cis	multi-tissue	Pritchard

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21351000-21353600	Weak transcription	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links