Variant report

Variant	rs12006448
Chromosome Location	chr9:21307340-21307341
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 103 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10114175	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs10114825	1.00[CEU][hapmap]
rs10125532	0.85[AMR][1000 genomes]
rs11999696	0.89[EUR][1000 genomes]
rs12000461	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12002231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12336789	0.92[EUR][1000 genomes]
rs12337907	1.00[CEU][hapmap]
rs12340718	0.92[EUR][1000 genomes]
rs17334047	0.92[EUR][1000 genomes]
rs17334054	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17334061	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28383773	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28383780	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28383791	1.00[AMR][1000 genomes]
rs28383792	1.00[AMR][1000 genomes]
rs28627173	0.84[EUR][1000 genomes]
rs35000944	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35101870	0.92[EUR][1000 genomes]
rs35353365	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3919593	1.00[CEU][hapmap]
rs41270127	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs41270129	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs41270131	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs41270133	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs41270135	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6475532	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7029860	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7037805	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72691656	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72691682	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72691685	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72691698	0.87[EUR][1000 genomes]
rs72691699	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72691700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72691701	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72691917	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72691933	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72691934	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72691936	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72691937	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72691939	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72691942	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72691948	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72693703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72693705	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72695780	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72695784	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72695785	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72695788	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72695795	1.00[EUR][1000 genomes]
rs72695797	1.00[EUR][1000 genomes]
rs72695798	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72695801	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72697305	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72697307	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72697311	0.94[EUR][1000 genomes]
rs72697312	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72697313	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72697314	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72697315	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72697317	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72697321	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72697322	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72697324	0.92[EUR][1000 genomes]
rs72697326	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72697327	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72699197	0.92[EUR][1000 genomes]
rs72699198	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72699199	0.92[EUR][1000 genomes]
rs72699200	0.92[EUR][1000 genomes]
rs72699201	0.92[EUR][1000 genomes]
rs72699202	0.92[EUR][1000 genomes]
rs72701303	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72701305	0.92[EUR][1000 genomes]
rs72701306	0.92[EUR][1000 genomes]
rs72701307	0.92[EUR][1000 genomes]
rs72701308	0.92[EUR][1000 genomes]
rs72701309	0.92[EUR][1000 genomes]
rs72701311	0.92[EUR][1000 genomes]
rs72701312	0.92[EUR][1000 genomes]
rs72701313	0.92[EUR][1000 genomes]
rs72701314	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72701315	0.92[EUR][1000 genomes]
rs72701316	0.92[EUR][1000 genomes]
rs72701317	0.92[EUR][1000 genomes]
rs72701318	0.92[EUR][1000 genomes]
rs72701319	0.92[EUR][1000 genomes]
rs72701320	0.92[EUR][1000 genomes]
rs72701321	0.89[EUR][1000 genomes]
rs72701345	1.00[AMR][1000 genomes]
rs72701355	1.00[AMR][1000 genomes]
rs72701366	0.85[AMR][1000 genomes]
rs72701368	0.85[AMR][1000 genomes]
rs7862030	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7863385	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7865334	1.00[EUR][1000 genomes]
rs9333355	1.00[CEU][hapmap]
rs9333356	1.00[CEU][hapmap];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817218	chr9:20687769-21309177	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv892724	chr9:20690244-21517302	Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
3	nsv892734	chr9:21108817-21323089	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv613757	chr9:21289923-21316649	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh	TF binding region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12006448	KLHL9	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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