The 2.0 version of rSNPBase

Variant report

Variant rs41270133
Chromosome Location chr9:21333254-21333255
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:121 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr9:21321600-21333400 Weak transcription Colonic Mucosa Colon
2 chr9:21322200-21333600 Weak transcription Placenta Amnion Placenta Amnion
3 chr9:21323400-21333800 Weak transcription Lung lung
4 chr9:21324400-21333400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr9:21326800-21333400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
6 chr9:21326800-21333600 Enhancers Primary T helper naive cells fromperipheralblood blood
7 chr9:21326800-21333800 Enhancers Primary T helper memory cells from peripheral blood 1 blood
8 chr9:21329000-21333800 Genic enhancers Foreskin Melanocyte Primary Cells skin03 Skin
9 chr9:21330000-21333400 Enhancers Duodenum Smooth Muscle Duodenum
10 chr9:21330000-21333600 Genic enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
11 chr9:21330000-21333600 Enhancers Pancreatic Islets Pancreatic Islet
12 chr9:21330000-21333800 Enhancers Liver Liver
13 chr9:21330000-21334000 Enhancers Primary T helper 17 cells PMA-I stimulated --
14 chr9:21330000-21334000 Enhancers Stomach Mucosa stomach
15 chr9:21330200-21333800 Enhancers Primary T killer naive cells fromperipheralblood blood
16 chr9:21330400-21333400 Genic enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
17 chr9:21330400-21333400 Enhancers Skeletal Muscle Male skeletal muscle
18 chr9:21330600-21333800 Genic enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
19 chr9:21330600-21334400 Enhancers Small Intestine intestine
20 chr9:21331000-21333400 Enhancers Cortex derived primary cultured neurospheres brain
21 chr9:21331000-21333800 Genic enhancers H9 Derived Neuron Cultured Cells ES cell derived
22 chr9:21331000-21334000 Transcr. at gene 5' and 3' hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
23 chr9:21331200-21334000 Enhancers Primary neutrophils fromperipheralblood blood
24 chr9:21331400-21333800 Enhancers Right Ventricle heart
25 chr9:21331400-21334400 Enhancers Primary monocytes fromperipheralblood blood
26 chr9:21331600-21333400 Enhancers Right Atrium heart
27 chr9:21331600-21333600 Transcr. at gene 5' and 3' Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
28 chr9:21331600-21333600 Genic enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
29 chr9:21331600-21333600 Enhancers Brain Cingulate Gyrus brain
30 chr9:21331600-21333800 Transcr. at gene 5' and 3' Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
31 chr9:21331600-21334000 Genic enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
32 chr9:21331600-21334200 Transcr. at gene 5' and 3' Muscle Satellite Cultured Cells --
33 chr9:21331600-21334200 Transcr. at gene 5' and 3' Dnd41 blood
34 chr9:21331600-21334200 Transcr. at gene 5' and 3' Osteobl bone
35 chr9:21331600-21334800 Flanking Active TSS Adipose Nuclei Adipose
36 chr9:21331800-21333400 Genic enhancers HSMM muscle
37 chr9:21331800-21333600 Enhancers Aorta Aorta
38 chr9:21331800-21334200 Flanking Active TSS Ganglion Eminence derived primary cultured neurospheres brain
39 chr9:21331800-21334400 Enhancers Primary T helper cells fromperipheralblood blood
40 chr9:21331800-21334400 Transcr. at gene 5' and 3' GM12878-XiMat blood
41 chr9:21332000-21333400 Weak transcription Esophagus oesophagus
42 chr9:21332000-21334400 Enhancers Primary T regulatory cells fromperipheralblood blood
43 chr9:21332200-21333400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
44 chr9:21332200-21333800 Transcr. at gene 5' and 3' Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
45 chr9:21332400-21333800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
46 chr9:21332400-21333800 Transcr. at gene 5' and 3' Brain Anterior Caudate brain
47 chr9:21332400-21333800 Enhancers Psoas Muscle Psoas
48 chr9:21332400-21334200 Transcr. at gene 5' and 3' A549 lung
49 chr9:21332400-21334400 Transcr. at gene 5' and 3' hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
50 chr9:21332400-21334400 Flanking Active TSS HUVEC blood vessel

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Last update: Aug 31, 2015