Variant report

Variant	rs72695785
Chromosome Location	chr9:21314639-21314640
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10114175	0.92[EUR][1000 genomes]
rs10125532	0.85[AMR][1000 genomes]
rs11999696	0.89[EUR][1000 genomes]
rs12000461	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12002231	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12336789	0.92[EUR][1000 genomes]
rs12340718	0.92[EUR][1000 genomes]
rs17334047	0.92[EUR][1000 genomes]
rs17334054	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17334061	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28383773	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28383780	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28383791	1.00[AMR][1000 genomes]
rs28383792	1.00[AMR][1000 genomes]
rs28627173	0.84[EUR][1000 genomes]
rs35000944	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35101870	0.92[EUR][1000 genomes]
rs35353365	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs41270127	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs41270129	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs41270131	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs41270133	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs41270135	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6475532	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7029860	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7037805	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72691656	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72691682	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72691685	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72691698	0.87[EUR][1000 genomes]
rs72691699	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72691700	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72691701	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72691917	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72691933	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72691934	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72691936	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72691937	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72691939	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72691942	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72691948	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72693703	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72693705	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72695780	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72695784	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72695788	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72695795	1.00[EUR][1000 genomes]
rs72695797	1.00[EUR][1000 genomes]
rs72695798	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72695801	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72697305	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72697307	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72697311	0.94[EUR][1000 genomes]
rs72697312	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72697313	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72697314	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72697315	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72697317	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72697321	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72697322	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72697324	0.92[EUR][1000 genomes]
rs72697326	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72697327	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72699197	0.92[EUR][1000 genomes]
rs72699198	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72699199	0.92[EUR][1000 genomes]
rs72699200	0.92[EUR][1000 genomes]
rs72699201	0.92[EUR][1000 genomes]
rs72699202	0.92[EUR][1000 genomes]
rs72701303	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72701305	0.92[EUR][1000 genomes]
rs72701306	0.92[EUR][1000 genomes]
rs72701307	0.92[EUR][1000 genomes]
rs72701308	0.92[EUR][1000 genomes]
rs72701309	0.92[EUR][1000 genomes]
rs72701311	0.92[EUR][1000 genomes]
rs72701312	0.92[EUR][1000 genomes]
rs72701313	0.92[EUR][1000 genomes]
rs72701314	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72701315	0.92[EUR][1000 genomes]
rs72701316	0.92[EUR][1000 genomes]
rs72701317	0.92[EUR][1000 genomes]
rs72701318	0.92[EUR][1000 genomes]
rs72701319	0.92[EUR][1000 genomes]
rs72701320	0.92[EUR][1000 genomes]
rs72701321	0.89[EUR][1000 genomes]
rs72701345	1.00[AMR][1000 genomes]
rs72701355	1.00[AMR][1000 genomes]
rs72701366	0.85[AMR][1000 genomes]
rs72701368	0.85[AMR][1000 genomes]
rs7862030	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7863385	0.94[EUR][1000 genomes]
rs7865334	1.00[EUR][1000 genomes]
rs9333356	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892724	chr9:20690244-21517302	Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
2	nsv892734	chr9:21108817-21323089	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv613757	chr9:21289923-21316649	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh	TF binding region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21309800-21322600	Weak transcription	Brain Substantia Nigra	brain
2	chr9:21312200-21315600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr9:21312200-21316400	Weak transcription	Esophagus	oesophagus
4	chr9:21312200-21322000	Weak transcription	GM12878-XiMat	blood
5	chr9:21313000-21316200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:21313000-21316200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr9:21313400-21317800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr9:21313600-21316400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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