Variant report

Variant	rs72699202
Chromosome Location	chr9:21357015-21357016
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10114175	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10121687	0.81[EUR][1000 genomes]
rs11999696	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12000461	0.92[EUR][1000 genomes]
rs12002231	0.84[EUR][1000 genomes]
rs12336789	1.00[EUR][1000 genomes]
rs12340196	0.81[EUR][1000 genomes]
rs12340718	1.00[EUR][1000 genomes]
rs17334047	1.00[EUR][1000 genomes]
rs28383780	0.97[EUR][1000 genomes]
rs35000944	0.97[EUR][1000 genomes]
rs35101870	1.00[EUR][1000 genomes]
rs35353365	1.00[EUR][1000 genomes]
rs41270127	0.97[EUR][1000 genomes]
rs41270129	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs41270131	0.97[EUR][1000 genomes]
rs41270133	0.97[EUR][1000 genomes]
rs41270135	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6475532	0.92[EUR][1000 genomes]
rs7037805	0.84[EUR][1000 genomes]
rs72691656	0.89[EUR][1000 genomes]
rs72691682	0.84[EUR][1000 genomes]
rs72691685	0.84[EUR][1000 genomes]
rs72691699	0.84[EUR][1000 genomes]
rs72691700	0.84[EUR][1000 genomes]
rs72691701	0.84[EUR][1000 genomes]
rs72691939	0.81[EUR][1000 genomes]
rs72691942	0.81[EUR][1000 genomes]
rs72691948	0.81[EUR][1000 genomes]
rs72693703	0.84[EUR][1000 genomes]
rs72693705	0.84[EUR][1000 genomes]
rs72695780	0.92[EUR][1000 genomes]
rs72695784	0.92[EUR][1000 genomes]
rs72695785	0.92[EUR][1000 genomes]
rs72695788	0.92[EUR][1000 genomes]
rs72695795	0.92[EUR][1000 genomes]
rs72695797	0.92[EUR][1000 genomes]
rs72695798	0.92[EUR][1000 genomes]
rs72695801	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72697305	0.97[EUR][1000 genomes]
rs72697307	0.97[EUR][1000 genomes]
rs72697311	0.97[EUR][1000 genomes]
rs72697312	0.97[EUR][1000 genomes]
rs72697313	0.97[EUR][1000 genomes]
rs72697314	0.97[EUR][1000 genomes]
rs72697315	0.97[EUR][1000 genomes]
rs72697317	0.97[EUR][1000 genomes]
rs72697321	1.00[EUR][1000 genomes]
rs72697322	1.00[EUR][1000 genomes]
rs72697324	1.00[EUR][1000 genomes]
rs72697326	1.00[EUR][1000 genomes]
rs72697327	1.00[EUR][1000 genomes]
rs72699197	1.00[EUR][1000 genomes]
rs72699198	1.00[EUR][1000 genomes]
rs72699199	1.00[EUR][1000 genomes]
rs72699200	1.00[EUR][1000 genomes]
rs72699201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72701303	1.00[EUR][1000 genomes]
rs72701305	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72701306	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72701307	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72701308	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72701309	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72701311	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72701312	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72701313	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72701314	1.00[EUR][1000 genomes]
rs72701315	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72701316	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72701317	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72701318	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72701319	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72701320	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72701321	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72701344	0.81[EUR][1000 genomes]
rs72701345	0.81[EUR][1000 genomes]
rs7862030	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7863385	0.97[EUR][1000 genomes]
rs7865334	0.92[EUR][1000 genomes]
rs9333356	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892724	chr9:20690244-21517302	Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
2	nsv892736	chr9:21327141-21391698	Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv892737	chr9:21352862-21408824	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21357000-21357200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:21357000-21357400	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr9:21357000-21357400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr9:21357000-21357400	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr9:21357000-21357400	Enhancers	GM12878-XiMat	blood
6	chr9:21357000-21357600	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr9:21357000-21358200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chr9:21357000-21358800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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