Variant report

Variant	rs72691939
Chromosome Location	chr9:21252524-21252525
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10114175	0.81[EUR][1000 genomes]
rs12000461	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12002231	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12336789	0.81[EUR][1000 genomes]
rs12340718	0.81[EUR][1000 genomes]
rs17334047	0.81[EUR][1000 genomes]
rs17334054	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17334061	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28383773	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28383780	0.85[AMR][1000 genomes]
rs28383791	0.85[AMR][1000 genomes]
rs28383792	0.85[AMR][1000 genomes]
rs35000944	0.85[AMR][1000 genomes]
rs35101870	0.81[EUR][1000 genomes]
rs35353365	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs41270127	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs41270129	0.84[EUR][1000 genomes]
rs41270131	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs41270133	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs41270135	0.84[EUR][1000 genomes]
rs6475532	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7029860	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7037805	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72691656	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72691682	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72691685	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72691699	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72691700	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72691701	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72691917	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72691931	0.82[EUR][1000 genomes]
rs72691933	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72691934	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72691936	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72691937	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72691942	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72691948	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72693703	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72693705	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72695780	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72695784	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72695785	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72695788	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72695795	0.89[EUR][1000 genomes]
rs72695797	0.89[EUR][1000 genomes]
rs72695798	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72695801	0.84[EUR][1000 genomes]
rs72697305	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72697307	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72697311	0.84[EUR][1000 genomes]
rs72697312	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72697313	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72697314	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72697315	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72697317	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72697321	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72697322	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72697324	0.81[EUR][1000 genomes]
rs72697326	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72697327	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72699197	0.81[EUR][1000 genomes]
rs72699198	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72699199	0.81[EUR][1000 genomes]
rs72699200	0.81[EUR][1000 genomes]
rs72699201	0.81[EUR][1000 genomes]
rs72699202	0.81[EUR][1000 genomes]
rs72701303	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72701305	0.81[EUR][1000 genomes]
rs72701306	0.81[EUR][1000 genomes]
rs72701307	0.81[EUR][1000 genomes]
rs72701308	0.81[EUR][1000 genomes]
rs72701309	0.81[EUR][1000 genomes]
rs72701311	0.81[EUR][1000 genomes]
rs72701312	0.81[EUR][1000 genomes]
rs72701313	0.81[EUR][1000 genomes]
rs72701314	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72701315	0.81[EUR][1000 genomes]
rs72701316	0.81[EUR][1000 genomes]
rs72701317	0.81[EUR][1000 genomes]
rs72701318	0.81[EUR][1000 genomes]
rs72701319	0.81[EUR][1000 genomes]
rs72701320	0.81[EUR][1000 genomes]
rs72701345	0.85[AMR][1000 genomes]
rs72701355	0.85[AMR][1000 genomes]
rs7862030	0.81[EUR][1000 genomes]
rs7863385	0.84[EUR][1000 genomes]
rs7865334	0.89[EUR][1000 genomes]
rs9333356	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817218	chr9:20687769-21309177	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv892724	chr9:20690244-21517302	Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
3	nsv892734	chr9:21108817-21323089	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv1035128	chr9:21196300-21269669	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv982643	chr9:21242163-21262125	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21251000-21254400	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr9:21251400-21252800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:21251600-21252800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr9:21251600-21252800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:21251600-21253000	Enhancers	Primary hematopoietic stem cells	blood
6	chr9:21251600-21253200	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr9:21251800-21253600	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr9:21251800-21254200	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr9:21252000-21252800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr9:21252200-21254000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr9:21252400-21253400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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