Variant report

Variant	rs72691936
Chromosome Location	chr9:21245193-21245194
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs12000461	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12002231	1.00[AMR][1000 genomes]
rs17334054	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17334061	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28383773	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28383780	1.00[AMR][1000 genomes]
rs28383791	1.00[AMR][1000 genomes]
rs28383792	1.00[AMR][1000 genomes]
rs3091296	0.82[EUR][1000 genomes]
rs35000944	1.00[AMR][1000 genomes]
rs35353365	1.00[AMR][1000 genomes]
rs41270127	1.00[AMR][1000 genomes]
rs41270129	0.85[AMR][1000 genomes]
rs41270131	1.00[AMR][1000 genomes]
rs41270133	1.00[AMR][1000 genomes]
rs41270135	0.85[AMR][1000 genomes]
rs6475532	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7029860	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7037805	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7041238	0.82[EUR][1000 genomes]
rs7041395	0.82[EUR][1000 genomes]
rs72691656	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72691682	1.00[AMR][1000 genomes]
rs72691685	1.00[AMR][1000 genomes]
rs72691699	1.00[AMR][1000 genomes]
rs72691700	1.00[AMR][1000 genomes]
rs72691701	1.00[AMR][1000 genomes]
rs72691917	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72691931	0.95[EUR][1000 genomes]
rs72691933	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72691934	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72691937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72691939	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72691942	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72691948	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72693703	1.00[AMR][1000 genomes]
rs72693705	1.00[AMR][1000 genomes]
rs72695780	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72695784	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72695785	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72695788	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72695795	0.81[EUR][1000 genomes]
rs72695797	0.81[EUR][1000 genomes]
rs72695798	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72695801	0.85[AMR][1000 genomes]
rs72697305	1.00[AMR][1000 genomes]
rs72697307	1.00[AMR][1000 genomes]
rs72697312	1.00[AMR][1000 genomes]
rs72697313	1.00[AMR][1000 genomes]
rs72697314	1.00[AMR][1000 genomes]
rs72697315	1.00[AMR][1000 genomes]
rs72697317	1.00[AMR][1000 genomes]
rs72697321	1.00[AMR][1000 genomes]
rs72697322	1.00[AMR][1000 genomes]
rs72697326	1.00[AMR][1000 genomes]
rs72697327	1.00[AMR][1000 genomes]
rs72699198	1.00[AMR][1000 genomes]
rs72701303	1.00[AMR][1000 genomes]
rs72701314	1.00[AMR][1000 genomes]
rs72701345	1.00[AMR][1000 genomes]
rs72701355	1.00[AMR][1000 genomes]
rs7862030	0.85[AMR][1000 genomes]
rs7865334	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817218	chr9:20687769-21309177	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv892724	chr9:20690244-21517302	Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
3	nsv892734	chr9:21108817-21323089	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv1035128	chr9:21196300-21269669	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv982643	chr9:21242163-21262125	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21244600-21245400	Enhancers	Primary hematopoietic stem cells	blood
2	chr9:21244600-21245400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr9:21244600-21245600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr9:21244600-21245800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr9:21244600-21245800	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr9:21244600-21246000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
7	chr9:21245000-21245200	Enhancers	GM12878-XiMat	blood
8	chr9:21245000-21245400	Enhancers	Primary neutrophils fromperipheralblood	blood

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