Variant report

Variant	rs72695801
Chromosome Location	chr9:21325818-21325819
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:21325580..21327702-chr9:21329735..21331651,2	MCF-7	breast:

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10114175	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11999696	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12000461	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12002231	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12336789	0.97[EUR][1000 genomes]
rs12340718	0.97[EUR][1000 genomes]
rs17334047	0.97[EUR][1000 genomes]
rs17334054	0.85[AMR][1000 genomes]
rs17334061	0.85[AMR][1000 genomes]
rs28383773	0.85[AMR][1000 genomes]
rs28383780	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28383791	0.85[AMR][1000 genomes]
rs28383792	0.85[AMR][1000 genomes]
rs35000944	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35101870	0.97[EUR][1000 genomes]
rs35353365	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs41270127	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41270129	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41270131	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41270133	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41270135	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6475532	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7029860	0.85[AMR][1000 genomes]
rs7037805	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72691656	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72691682	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72691685	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72691698	0.82[EUR][1000 genomes]
rs72691699	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72691700	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72691701	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72691917	0.85[AMR][1000 genomes]
rs72691933	0.85[AMR][1000 genomes]
rs72691934	0.85[AMR][1000 genomes]
rs72691936	0.85[AMR][1000 genomes]
rs72691937	0.85[AMR][1000 genomes]
rs72691939	0.84[EUR][1000 genomes]
rs72691942	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72691948	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72693703	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72693705	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72695780	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72695784	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72695785	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72695788	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72695795	0.94[EUR][1000 genomes]
rs72695797	0.94[EUR][1000 genomes]
rs72695798	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72697305	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72697307	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72697311	1.00[EUR][1000 genomes]
rs72697312	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72697313	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72697314	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72697315	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72697317	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72697321	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72697322	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72697324	0.97[EUR][1000 genomes]
rs72697326	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72697327	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72699197	0.97[EUR][1000 genomes]
rs72699198	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72699199	0.97[EUR][1000 genomes]
rs72699200	0.97[EUR][1000 genomes]
rs72699201	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72699202	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72701303	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72701305	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72701306	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72701307	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72701308	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72701309	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72701311	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72701312	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72701313	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72701314	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72701315	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72701316	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72701317	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72701318	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72701319	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72701320	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72701321	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72701345	0.85[AMR][1000 genomes]
rs72701355	0.85[AMR][1000 genomes]
rs7862030	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7863385	1.00[EUR][1000 genomes]
rs7865334	0.94[EUR][1000 genomes]
rs9333356	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892724	chr9:20690244-21517302	Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21316600-21330600	Weak transcription	Small Intestine	intestine
2	chr9:21317000-21326800	Weak transcription	Hela-S3	cervix
3	chr9:21317200-21331600	Weak transcription	Esophagus	oesophagus
4	chr9:21317200-21331600	Weak transcription	Gastric	stomach
5	chr9:21318200-21330000	Weak transcription	Brain Anterior Caudate	brain
6	chr9:21318200-21330400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr9:21318800-21326800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr9:21318800-21326800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr9:21318800-21330600	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr9:21318800-21331000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr9:21318800-21331200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr9:21318800-21331800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr9:21318800-21332600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr9:21318800-21332800	Weak transcription	Fetal Kidney	kidney
15	chr9:21319000-21326000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr9:21319000-21326800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr9:21319000-21332200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr9:21319000-21333200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr9:21319400-21329400	Weak transcription	Fetal Heart	heart
20	chr9:21319600-21333200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr9:21319800-21326000	Weak transcription	Fetal Brain Male	brain
22	chr9:21320200-21326400	Strong transcription	HSMM	muscle
23	chr9:21320600-21326000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr9:21320600-21326200	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr9:21320600-21331600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr9:21320800-21326200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr9:21321000-21326800	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr9:21321200-21326000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr9:21321400-21326000	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr9:21321400-21331600	Weak transcription	Spleen	Spleen
31	chr9:21321600-21333400	Weak transcription	Colonic Mucosa	Colon
32	chr9:21321800-21326000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr9:21321800-21327000	Weak transcription	Brain Angular Gyrus	brain
34	chr9:21322000-21331600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr9:21322000-21331600	Weak transcription	HepG2	liver
36	chr9:21322200-21333600	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr9:21322400-21330400	Weak transcription	Psoas Muscle	Psoas
38	chr9:21322600-21326200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr9:21322600-21326200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr9:21322600-21327000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr9:21322800-21326000	Strong transcription	Duodenum Mucosa	Duodenum
42	chr9:21322800-21326000	Strong transcription	Rectal Mucosa Donor 29	rectum
43	chr9:21322800-21326000	Strong transcription	Dnd41	blood
44	chr9:21322800-21326200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr9:21322800-21326200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr9:21322800-21330000	Weak transcription	Stomach Mucosa	stomach
47	chr9:21323000-21326000	Strong transcription	NH-A	brain
48	chr9:21323200-21326200	Strong transcription	HSMMtube	muscle
49	chr9:21323400-21331800	Weak transcription	Aorta	Aorta
50	chr9:21323400-21333800	Weak transcription	Lung	lung

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