Variant report
| Variant | rs72709385 |
|---|---|
| Chromosome Location | chr1:173673836-173673837 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000117592 | Chromatin interaction |
| ENSG00000076321 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10489894 | 0.86[ASN][1000 genomes] |
| rs12029440 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs1535527 | 0.86[ASN][1000 genomes] |
| rs16846529 | 0.86[ASN][1000 genomes] |
| rs16846541 | 0.83[ASN][1000 genomes] |
| rs17359906 | 0.89[ASN][1000 genomes] |
| rs1969757 | 0.86[ASN][1000 genomes] |
| rs2295957 | 0.86[ASN][1000 genomes] |
| rs35571466 | 0.86[ASN][1000 genomes] |
| rs56064477 | 0.86[ASN][1000 genomes] |
| rs56382804 | 0.86[ASN][1000 genomes] |
| rs61609614 | 0.86[ASN][1000 genomes] |
| rs61827866 | 0.91[EUR][1000 genomes] |
| rs61827869 | 0.92[ASN][1000 genomes] |
| rs61827871 | 0.87[EUR][1000 genomes] |
| rs6667813 | 0.86[ASN][1000 genomes] |
| rs6682076 | 0.86[ASN][1000 genomes] |
| rs6698314 | 0.86[ASN][1000 genomes] |
| rs6700754 | 0.86[ASN][1000 genomes] |
| rs72709390 | 1.00[ASN][1000 genomes] |
| rs72711407 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs72711419 | 0.86[ASN][1000 genomes] |
| rs72711421 | 0.86[ASN][1000 genomes] |
| rs72711423 | 0.86[ASN][1000 genomes] |
| rs7525115 | 0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1012384 | chr1:173614816-173974426 | Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 294 gene(s) | inside rSNPs | diseases |
| 2 | nsv1014827 | chr1:173653453-173692470 | Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
