Variant report

Variant	rs7270950
Chromosome Location	chr20:53144245-53144246
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:53140576..53144414-chr20:53148249..53150515,4	MCF-7	breast:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs16999812	1.00[MEX][hapmap]
rs28506968	0.83[AMR][1000 genomes]
rs28523944	0.83[AMR][1000 genomes]
rs28646056	0.83[AMR][1000 genomes]
rs28667935	0.83[AMR][1000 genomes]
rs55916284	0.83[AMR][1000 genomes]
rs56158072	0.83[AMR][1000 genomes]
rs57628263	0.83[AMR][1000 genomes]
rs57722500	0.83[AMR][1000 genomes]
rs59393556	0.83[AMR][1000 genomes]
rs6014051	0.85[AMR][1000 genomes]
rs6014062	1.00[MEX][hapmap]
rs6014086	1.00[MEX][hapmap]
rs6091910	0.83[AMR][1000 genomes]
rs6091911	0.83[AMR][1000 genomes]
rs6091915	0.83[AMR][1000 genomes]
rs6091916	0.83[AMR][1000 genomes]
rs6091917	0.83[AMR][1000 genomes]
rs6091918	0.83[AMR][1000 genomes]
rs6091920	0.83[AMR][1000 genomes]
rs6098037	0.83[AMR][1000 genomes]
rs6098038	0.83[AMR][1000 genomes]
rs6098048	0.83[AMR][1000 genomes]
rs6098049	0.83[AMR][1000 genomes]
rs6098050	1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs6098052	1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs6098053	0.83[AMR][1000 genomes]
rs6098054	0.83[AMR][1000 genomes]
rs6098055	0.83[AMR][1000 genomes]
rs6098056	0.83[AMR][1000 genomes]
rs6098057	0.83[AMR][1000 genomes]
rs6098058	1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs6098059	0.83[AMR][1000 genomes]
rs6098060	0.83[AMR][1000 genomes]
rs6098069	0.83[AMR][1000 genomes]
rs6098070	0.83[AMR][1000 genomes]
rs6098071	0.83[AMR][1000 genomes]
rs6098072	0.83[AMR][1000 genomes]
rs6098073	0.83[AMR][1000 genomes]
rs6098075	0.83[AMR][1000 genomes]
rs6098076	1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs6098077	0.83[AMR][1000 genomes]
rs6098078	1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs6098079	1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs6098080	0.83[AMR][1000 genomes]
rs6098081	1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs6098083	0.83[AMR][1000 genomes]
rs6512962	1.00[MEX][hapmap]
rs7262672	0.83[AMR][1000 genomes]
rs7265441	0.83[AMR][1000 genomes]
rs7265504	0.83[AMR][1000 genomes]
rs7266935	0.83[AMR][1000 genomes]
rs7267758	0.83[AMR][1000 genomes]
rs7360669	0.83[AMR][1000 genomes]
rs7362510	0.83[AMR][1000 genomes]
rs73911920	0.83[AMR][1000 genomes]
rs73911922	0.83[AMR][1000 genomes]
rs73911933	0.83[AMR][1000 genomes]
rs73911934	0.83[AMR][1000 genomes]
rs73911936	0.83[AMR][1000 genomes]
rs73911939	0.83[AMR][1000 genomes]
rs73911941	0.83[AMR][1000 genomes]
rs73911943	0.83[AMR][1000 genomes]
rs73911954	0.83[AMR][1000 genomes]
rs73911956	0.83[AMR][1000 genomes]
rs73911957	0.83[AMR][1000 genomes]
rs8116290	0.83[AMR][1000 genomes]
rs8116343	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:53120800-53148800	Weak transcription	Left Ventricle	heart
2	chr20:53129600-53149200	Weak transcription	Aorta	Aorta
3	chr20:53143000-53147200	Weak transcription	Brain Germinal Matrix	brain
4	chr20:53144000-53144400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
5	chr20:53144200-53144600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links