Variant report

Variant	rs6098054
Chromosome Location	chr20:53154566-53154567
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:53148405..53152406-chr20:53153631..53156129,3	MCF-7	breast:
2	chr20:53151757..53155024-chr20:53157486..53161432,6	MCF-7	breast:
3	chr20:53153790..53156293-chr20:53221981..53224189,2	MCF-7	breast:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs28506968	1.00[AMR][1000 genomes]
rs28523944	1.00[AMR][1000 genomes]
rs28646056	1.00[AMR][1000 genomes]
rs28667935	1.00[AMR][1000 genomes]
rs55916284	1.00[AMR][1000 genomes]
rs56003098	0.83[AMR][1000 genomes]
rs56150515	0.83[AMR][1000 genomes]
rs56158072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57628263	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57722500	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59393556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6091910	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6091911	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6091915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6091916	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6091917	1.00[AMR][1000 genomes]
rs6091918	1.00[AMR][1000 genomes]
rs6091920	1.00[AMR][1000 genomes]
rs6098037	1.00[AMR][1000 genomes]
rs6098038	1.00[AMR][1000 genomes]
rs6098040	0.83[AMR][1000 genomes]
rs6098048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6098049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6098050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6098051	0.83[AMR][1000 genomes]
rs6098052	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6098053	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6098055	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6098056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6098057	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6098058	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6098059	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6098060	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6098069	1.00[AMR][1000 genomes]
rs6098070	1.00[AMR][1000 genomes]
rs6098071	1.00[AMR][1000 genomes]
rs6098072	1.00[AMR][1000 genomes]
rs6098073	1.00[AMR][1000 genomes]
rs6098075	1.00[AMR][1000 genomes]
rs6098076	1.00[AMR][1000 genomes]
rs6098077	1.00[AMR][1000 genomes]
rs6098078	1.00[AMR][1000 genomes]
rs6098079	1.00[AMR][1000 genomes]
rs6098080	1.00[AMR][1000 genomes]
rs6098081	1.00[AMR][1000 genomes]
rs6098083	1.00[AMR][1000 genomes]
rs7262672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7265441	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7265504	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7266935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7267758	1.00[AMR][1000 genomes]
rs7270950	0.83[AMR][1000 genomes]
rs7360669	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7362510	1.00[AMR][1000 genomes]
rs73911920	1.00[AMR][1000 genomes]
rs73911922	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73911933	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73911934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73911936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73911939	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73911941	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73911943	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73911954	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73911956	1.00[AMR][1000 genomes]
rs73911957	1.00[AMR][1000 genomes]
rs8116290	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8116343	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv1067497	chr20:53146241-53751820	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:53153000-53161800	Weak transcription	Osteobl	bone
2	chr20:53153400-53155200	Weak transcription	Ovary	ovary

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