Variant report

Variant	rs73911922
Chromosome Location	chr20:53130637-53130638
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs28506968	1.00[AMR][1000 genomes]
rs28523944	1.00[AMR][1000 genomes]
rs28646056	1.00[AMR][1000 genomes]
rs28667935	1.00[AMR][1000 genomes]
rs55916284	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56003098	0.83[AMR][1000 genomes]
rs56150515	0.83[AMR][1000 genomes]
rs56158072	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57628263	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57722500	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59393556	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6091910	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6091911	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6091915	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6091916	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6091917	1.00[AMR][1000 genomes]
rs6091918	1.00[AMR][1000 genomes]
rs6091920	1.00[AMR][1000 genomes]
rs6098037	1.00[AMR][1000 genomes]
rs6098038	1.00[AMR][1000 genomes]
rs6098040	0.83[AMR][1000 genomes]
rs6098048	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6098049	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6098050	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6098051	0.83[AMR][1000 genomes]
rs6098052	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6098053	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6098054	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6098055	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6098056	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6098057	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6098058	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6098059	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6098060	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6098069	1.00[AMR][1000 genomes]
rs6098070	1.00[AMR][1000 genomes]
rs6098071	1.00[AMR][1000 genomes]
rs6098072	1.00[AMR][1000 genomes]
rs6098073	1.00[AMR][1000 genomes]
rs6098075	1.00[AMR][1000 genomes]
rs6098076	1.00[AMR][1000 genomes]
rs6098077	1.00[AMR][1000 genomes]
rs6098078	1.00[AMR][1000 genomes]
rs6098079	1.00[AMR][1000 genomes]
rs6098080	1.00[AMR][1000 genomes]
rs6098081	1.00[AMR][1000 genomes]
rs6098083	1.00[AMR][1000 genomes]
rs7262672	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7265441	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7265504	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7266935	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7267758	1.00[AMR][1000 genomes]
rs7270950	0.83[AMR][1000 genomes]
rs7360669	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7362510	1.00[AMR][1000 genomes]
rs73911920	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73911933	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73911934	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73911936	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73911939	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73911941	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73911943	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73911954	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73911956	1.00[AMR][1000 genomes]
rs73911957	1.00[AMR][1000 genomes]
rs8116290	1.00[AMR][1000 genomes]
rs8116343	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:53111200-53132400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr20:53118800-53132600	Weak transcription	NHDF-Ad	bronchial
3	chr20:53119600-53137000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr20:53120800-53148800	Weak transcription	Left Ventricle	heart
5	chr20:53127800-53130800	Weak transcription	Brain Anterior Caudate	brain
6	chr20:53127800-53131000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr20:53127800-53132400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr20:53127800-53133000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr20:53128600-53142800	Weak transcription	Psoas Muscle	Psoas
10	chr20:53129600-53149200	Weak transcription	Aorta	Aorta
11	chr20:53129800-53132000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr20:53130400-53131000	Enhancers	HepG2	liver
13	chr20:53130400-53131400	Enhancers	H9 Cell Line	embryonic stem cell
14	chr20:53130400-53131400	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr20:53130400-53131400	Enhancers	Fetal Kidney	kidney
16	chr20:53130600-53130800	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr20:53130600-53130800	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr20:53130600-53131200	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr20:53130600-53131400	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr20:53130600-53131400	Enhancers	H1 Cell Line	embryonic stem cell
21	chr20:53130600-53131400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr20:53130600-53131400	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr20:53130600-53131400	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr20:53130600-53132400	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr20:53130600-53133000	Enhancers	Fetal Brain Female	brain
26	chr20:53130600-53134600	Enhancers	Fetal Brain Male	brain

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