Variant report

Variant	rs6098051
Chromosome Location	chr20:53150590-53150591
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:53146553..53148462-chr20:53150458..53152861,2	MCF-7	breast:
2	chr20:53149408..53151407-chr20:53151746..53153466,2	MCF-7	breast:
3	chr20:53150589..53153407-chr20:53188313..53191169,3	MCF-7	breast:
4	chr20:53148405..53152406-chr20:53153631..53156129,3	MCF-7	breast:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs28506968	0.83[AMR][1000 genomes]
rs28523944	0.83[AMR][1000 genomes]
rs28646056	0.83[AMR][1000 genomes]
rs28667935	0.83[AMR][1000 genomes]
rs55916284	0.83[AMR][1000 genomes]
rs56003098	1.00[AMR][1000 genomes]
rs56150515	1.00[AMR][1000 genomes]
rs56158072	0.83[AMR][1000 genomes]
rs57628263	0.83[AMR][1000 genomes]
rs57722500	0.83[AMR][1000 genomes]
rs59393556	0.83[AMR][1000 genomes]
rs6091910	0.93[YRI][hapmap];0.83[AMR][1000 genomes]
rs6091911	0.93[YRI][hapmap];0.83[AMR][1000 genomes]
rs6091915	0.93[YRI][hapmap];0.83[AMR][1000 genomes]
rs6091916	0.83[AMR][1000 genomes]
rs6091917	0.83[AMR][1000 genomes]
rs6091918	0.83[AMR][1000 genomes]
rs6091920	0.83[AMR][1000 genomes]
rs6098037	0.83[AMR][1000 genomes]
rs6098038	0.83[AMR][1000 genomes]
rs6098040	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs6098048	0.92[YRI][hapmap];0.83[AMR][1000 genomes]
rs6098049	0.93[YRI][hapmap];0.83[AMR][1000 genomes]
rs6098050	0.92[YRI][hapmap];0.83[AMR][1000 genomes]
rs6098052	0.92[YRI][hapmap];0.83[AMR][1000 genomes]
rs6098053	0.93[YRI][hapmap];0.83[AMR][1000 genomes]
rs6098054	0.83[AMR][1000 genomes]
rs6098055	0.83[AMR][1000 genomes]
rs6098056	0.87[YRI][hapmap];0.83[AMR][1000 genomes]
rs6098057	0.93[YRI][hapmap];0.83[AMR][1000 genomes]
rs6098058	0.92[YRI][hapmap];0.83[AMR][1000 genomes]
rs6098059	0.93[YRI][hapmap];0.83[AMR][1000 genomes]
rs6098060	0.83[AMR][1000 genomes]
rs6098069	0.83[AMR][1000 genomes]
rs6098070	0.83[AMR][1000 genomes]
rs6098071	0.83[AMR][1000 genomes]
rs6098072	0.83[AMR][1000 genomes]
rs6098073	0.83[AMR][1000 genomes]
rs6098075	0.83[AMR][1000 genomes]
rs6098076	0.84[YRI][hapmap];0.83[AMR][1000 genomes]
rs6098077	0.83[AMR][1000 genomes]
rs6098078	0.84[YRI][hapmap];0.83[AMR][1000 genomes]
rs6098079	0.84[YRI][hapmap];0.83[AMR][1000 genomes]
rs6098080	0.83[AMR][1000 genomes]
rs6098081	0.84[YRI][hapmap];0.83[AMR][1000 genomes]
rs6098083	0.83[AMR][1000 genomes]
rs7262672	0.83[AMR][1000 genomes]
rs7265441	0.83[AMR][1000 genomes]
rs7265504	0.83[AMR][1000 genomes]
rs7266935	0.89[YRI][hapmap];0.83[AMR][1000 genomes]
rs7267758	0.93[YRI][hapmap];0.83[AMR][1000 genomes]
rs7360669	0.83[AMR][1000 genomes]
rs7362510	0.83[AMR][1000 genomes]
rs73911920	0.83[AMR][1000 genomes]
rs73911922	0.83[AMR][1000 genomes]
rs73911933	0.83[AMR][1000 genomes]
rs73911934	0.83[AMR][1000 genomes]
rs73911936	0.83[AMR][1000 genomes]
rs73911939	0.83[AMR][1000 genomes]
rs73911941	0.83[AMR][1000 genomes]
rs73911943	0.83[AMR][1000 genomes]
rs73911954	0.83[AMR][1000 genomes]
rs73911956	0.83[AMR][1000 genomes]
rs73911957	0.83[AMR][1000 genomes]
rs8116290	0.83[AMR][1000 genomes]
rs8116343	1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv1067497	chr20:53146241-53751820	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:53149000-53151200	Weak transcription	Fetal Brain Female	brain
2	chr20:53149400-53150600	Weak transcription	Psoas Muscle	Psoas
3	chr20:53149400-53151200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr20:53149600-53150800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr20:53150000-53151600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links