Variant report

Variant	rs6098040
Chromosome Location	chr20:53127932-53127933
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:53127125..53128837-chr20:53140416..53143219,2	MCF-7	breast:
2	chr20:53124583..53126241-chr20:53126438..53128877,2	MCF-7	breast:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs28506968	0.83[AMR][1000 genomes]
rs28523944	0.83[AMR][1000 genomes]
rs28646056	0.83[AMR][1000 genomes]
rs28667935	0.83[AMR][1000 genomes]
rs55916284	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56003098	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56150515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56158072	0.83[AMR][1000 genomes]
rs57628263	0.83[AMR][1000 genomes]
rs57722500	0.83[AMR][1000 genomes]
rs59393556	0.83[AMR][1000 genomes]
rs6091910	0.83[AMR][1000 genomes]
rs6091911	0.83[AMR][1000 genomes]
rs6091915	0.83[AMR][1000 genomes]
rs6091916	0.83[AMR][1000 genomes]
rs6091917	0.83[AMR][1000 genomes]
rs6091918	0.83[AMR][1000 genomes]
rs6091920	0.83[AMR][1000 genomes]
rs6098037	0.83[AMR][1000 genomes]
rs6098038	0.83[AMR][1000 genomes]
rs6098048	0.83[AMR][1000 genomes]
rs6098049	0.83[AMR][1000 genomes]
rs6098050	0.83[AMR][1000 genomes]
rs6098051	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs6098052	0.83[AMR][1000 genomes]
rs6098053	0.83[AMR][1000 genomes]
rs6098054	0.83[AMR][1000 genomes]
rs6098055	0.83[AMR][1000 genomes]
rs6098056	0.83[AMR][1000 genomes]
rs6098057	0.83[AMR][1000 genomes]
rs6098058	0.83[AMR][1000 genomes]
rs6098059	0.83[AMR][1000 genomes]
rs6098060	0.83[AMR][1000 genomes]
rs6098069	0.83[AMR][1000 genomes]
rs6098070	0.83[AMR][1000 genomes]
rs6098071	0.83[AMR][1000 genomes]
rs6098072	0.83[AMR][1000 genomes]
rs6098073	0.83[AMR][1000 genomes]
rs6098075	0.83[AMR][1000 genomes]
rs6098076	0.83[AMR][1000 genomes]
rs6098077	0.83[AMR][1000 genomes]
rs6098078	0.83[AMR][1000 genomes]
rs6098079	0.83[AMR][1000 genomes]
rs6098080	0.83[AMR][1000 genomes]
rs6098081	0.83[AMR][1000 genomes]
rs6098083	0.83[AMR][1000 genomes]
rs7262672	0.83[AMR][1000 genomes]
rs7265441	0.83[AMR][1000 genomes]
rs7265504	0.83[AMR][1000 genomes]
rs7266935	0.83[AMR][1000 genomes]
rs7267758	0.83[AMR][1000 genomes]
rs7360669	0.83[AMR][1000 genomes]
rs7362510	0.83[AMR][1000 genomes]
rs73911920	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73911922	0.83[AMR][1000 genomes]
rs73911933	0.83[AMR][1000 genomes]
rs73911934	0.83[AMR][1000 genomes]
rs73911936	0.83[AMR][1000 genomes]
rs73911939	0.83[AMR][1000 genomes]
rs73911941	0.83[AMR][1000 genomes]
rs73911943	0.83[AMR][1000 genomes]
rs73911954	0.83[AMR][1000 genomes]
rs73911956	0.83[AMR][1000 genomes]
rs73911957	0.83[AMR][1000 genomes]
rs8116290	0.83[AMR][1000 genomes]
rs8116343	0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:53111200-53132400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr20:53115000-53130600	Weak transcription	Fetal Brain Female	brain
3	chr20:53118800-53132600	Weak transcription	NHDF-Ad	bronchial
4	chr20:53119600-53137000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr20:53120800-53129200	Weak transcription	Aorta	Aorta
6	chr20:53120800-53148800	Weak transcription	Left Ventricle	heart
7	chr20:53126200-53128600	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr20:53127200-53128000	Enhancers	Psoas Muscle	Psoas
9	chr20:53127400-53130600	Weak transcription	Fetal Brain Male	brain
10	chr20:53127600-53129200	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr20:53127600-53130400	Weak transcription	Fetal Kidney	kidney
12	chr20:53127600-53130600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr20:53127800-53128800	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr20:53127800-53130600	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr20:53127800-53130600	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr20:53127800-53130800	Weak transcription	Brain Anterior Caudate	brain
17	chr20:53127800-53131000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr20:53127800-53132400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr20:53127800-53133000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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