Variant report

Variant	rs6091910
Chromosome Location	chr20:53133281-53133282
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:53125892..53127915-chr20:53133208..53135728,2	MCF-7	breast:
2	chr20:53131557..53134721-chr20:53135286..53138375,3	MCF-7	breast:
3	chr20:53094603..53097316-chr20:53132108..53133984,2	MCF-7	breast:
4	chr20:53131035..53133953-chr20:53146900..53149514,3	MCF-7	breast:
5	chr20:53131011..53133856-chr20:53139491..53142546,3	MCF-7	breast:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs28506968	1.00[AMR][1000 genomes]
rs28523944	1.00[AMR][1000 genomes]
rs28646056	1.00[AMR][1000 genomes]
rs28667935	1.00[AMR][1000 genomes]
rs55916284	1.00[AMR][1000 genomes]
rs56003098	0.83[AMR][1000 genomes]
rs56150515	0.83[AMR][1000 genomes]
rs56158072	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57628263	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57722500	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59393556	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6091911	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6091915	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6091916	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6091917	1.00[AMR][1000 genomes]
rs6091918	1.00[AMR][1000 genomes]
rs6091920	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs6098037	1.00[AMR][1000 genomes]
rs6098038	1.00[AMR][1000 genomes]
rs6098040	0.83[AMR][1000 genomes]
rs6098048	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6098049	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6098050	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6098051	0.93[YRI][hapmap];0.83[AMR][1000 genomes]
rs6098052	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6098053	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6098054	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6098055	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6098056	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6098057	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6098058	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6098059	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6098060	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6098069	1.00[AMR][1000 genomes]
rs6098070	1.00[AMR][1000 genomes]
rs6098071	1.00[AMR][1000 genomes]
rs6098072	1.00[AMR][1000 genomes]
rs6098073	1.00[AMR][1000 genomes]
rs6098075	1.00[AMR][1000 genomes]
rs6098076	0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs6098077	1.00[AMR][1000 genomes]
rs6098078	0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs6098079	0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs6098080	1.00[AMR][1000 genomes]
rs6098081	0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs6098083	1.00[AMR][1000 genomes]
rs7262672	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7265441	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7265504	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7266935	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7267758	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7270950	0.83[AMR][1000 genomes]
rs7360669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7362510	1.00[AMR][1000 genomes]
rs73911920	1.00[AMR][1000 genomes]
rs73911922	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73911933	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73911934	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73911936	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73911939	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73911941	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73911943	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73911954	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73911956	1.00[AMR][1000 genomes]
rs73911957	1.00[AMR][1000 genomes]
rs8116290	1.00[AMR][1000 genomes]
rs8116343	0.92[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:53119600-53137000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr20:53120800-53148800	Weak transcription	Left Ventricle	heart
3	chr20:53128600-53142800	Weak transcription	Psoas Muscle	Psoas
4	chr20:53129600-53149200	Weak transcription	Aorta	Aorta
5	chr20:53130600-53134600	Enhancers	Fetal Brain Male	brain
6	chr20:53131400-53133600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr20:53131400-53140400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr20:53131400-53140800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr20:53132400-53133400	Weak transcription	Brain Germinal Matrix	brain
10	chr20:53132400-53140600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr20:53132400-53142000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr20:53132600-53140400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr20:53133000-53133400	Enhancers	Brain Anterior Caudate	brain
14	chr20:53133000-53133800	Flanking Active TSS	Fetal Brain Female	brain
15	chr20:53133200-53133400	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr20:53133200-53140800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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