Variant report

Variant	rs6098058
Chromosome Location	chr20:53157027-53157028
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:53156247..53159030-chr20:53207905..53210623,2	MCF-7	breast:
2	chr20:53156431..53159299-chr20:53159745..53162526,2	MCF-7	breast:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs16999812	1.00[MEX][hapmap]
rs28506968	1.00[AMR][1000 genomes]
rs28523944	1.00[AMR][1000 genomes]
rs28646056	1.00[AMR][1000 genomes]
rs28667935	1.00[AMR][1000 genomes]
rs55916284	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56003098	0.83[AMR][1000 genomes]
rs56150515	0.83[AMR][1000 genomes]
rs56158072	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57628263	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57722500	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59393556	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6014062	1.00[MEX][hapmap]
rs6014086	1.00[MEX][hapmap]
rs6091910	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6091911	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6091915	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6091916	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6091917	0.89[YRI][hapmap];1.00[AMR][1000 genomes]
rs6091918	1.00[AMR][1000 genomes]
rs6091920	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6098037	1.00[AMR][1000 genomes]
rs6098038	1.00[AMR][1000 genomes]
rs6098040	0.83[AMR][1000 genomes]
rs6098048	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6098049	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6098050	0.86[ASW][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6098051	0.92[YRI][hapmap];0.83[AMR][1000 genomes]
rs6098052	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6098053	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6098054	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6098055	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6098056	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6098057	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6098059	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6098060	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6098069	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs6098070	1.00[AMR][1000 genomes]
rs6098071	0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs6098072	0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs6098073	1.00[AMR][1000 genomes]
rs6098075	0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs6098076	0.87[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs6098077	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs6098078	0.87[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs6098079	0.86[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs6098080	1.00[AMR][1000 genomes]
rs6098081	0.87[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs6098083	0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs6512962	1.00[MEX][hapmap]
rs7262672	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7265441	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7265504	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7266935	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7267758	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7270950	1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs7360669	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7362510	0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs73911920	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73911922	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73911933	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73911934	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73911936	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73911939	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73911941	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73911943	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73911954	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73911956	1.00[AMR][1000 genomes]
rs73911957	1.00[AMR][1000 genomes]
rs8116290	1.00[AMR][1000 genomes]
rs8116343	0.91[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv1067497	chr20:53146241-53751820	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:53153000-53161800	Weak transcription	Osteobl	bone

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