Variant report

Variant	rs72719185
Chromosome Location	chr1:93858758-93858759
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11164922	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11811006	0.84[EUR][1000 genomes]
rs12069440	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12096122	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12405666	0.82[EUR][1000 genomes]
rs12409621	0.82[EUR][1000 genomes]
rs12411095	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1582773	0.84[EUR][1000 genomes]
rs17131718	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17131741	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17386609	0.82[EUR][1000 genomes]
rs1895903	0.84[EUR][1000 genomes]
rs2011212	0.81[EUR][1000 genomes]
rs2038698	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2081568	0.82[EUR][1000 genomes]
rs3088371	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4347219	0.82[EUR][1000 genomes]
rs57710451	0.84[EUR][1000 genomes]
rs59792151	0.81[EUR][1000 genomes]
rs60013975	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61101021	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61580948	0.81[EUR][1000 genomes]
rs66804824	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67012296	0.81[EUR][1000 genomes]
rs67998457	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72715394	0.82[EUR][1000 genomes]
rs72717318	0.81[EUR][1000 genomes]
rs72717337	0.82[EUR][1000 genomes]
rs72717354	0.82[EUR][1000 genomes]
rs72717374	0.82[EUR][1000 genomes]
rs7339890	0.84[EUR][1000 genomes]
rs900310	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871640	chr1:93807122-93953469	Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93853200-93866000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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