Variant report

Variant	rs61580948
Chromosome Location	chr1:93901076-93901077
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:93899795..93902659-chr1:93905298..93908245,2	MCF-7	breast:
2	chr1:93783418..93785179-chr1:93900538..93902737,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11164922	0.82[EUR][1000 genomes]
rs11164926	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11164930	0.93[EUR][1000 genomes]
rs11164932	0.81[AMR][1000 genomes]
rs11164940	0.81[EUR][1000 genomes]
rs11811006	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12060221	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12062584	0.83[EUR][1000 genomes]
rs12069440	0.93[EUR][1000 genomes]
rs12086857	0.81[AMR][1000 genomes]
rs12096122	0.93[EUR][1000 genomes]
rs12096561	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1582773	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17109951	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17109997	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1895903	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2011212	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2081568	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2624437	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57710451	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59792151	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61101021	0.82[EUR][1000 genomes]
rs6688111	0.94[EUR][1000 genomes]
rs67012296	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67998457	0.82[EUR][1000 genomes]
rs72719185	0.81[EUR][1000 genomes]
rs72721009	0.81[EUR][1000 genomes]
rs72721010	0.81[EUR][1000 genomes]
rs72721014	0.81[EUR][1000 genomes]
rs72721019	0.81[EUR][1000 genomes]
rs72961351	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7339890	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7539210	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7541984	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7553695	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs900310	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871640	chr1:93807122-93953469	Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	esv3375834	chr1:93872980-93904647	ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93899400-93901200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:93899600-93903400	Weak transcription	Liver	Liver
3	chr1:93901000-93901200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:93901000-93901200	Enhancers	Colonic Mucosa	Colon
5	chr1:93901000-93901200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
6	chr1:93901000-93912800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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