Variant report

Variant	rs12086857
Chromosome Location	chr1:93948012-93948013
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1079750	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11164930	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164932	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164940	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12060221	0.82[EUR][1000 genomes]
rs12062584	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12069440	0.95[ASN][1000 genomes]
rs12096122	0.86[ASN][1000 genomes]
rs12096561	0.82[EUR][1000 genomes]
rs12409932	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12410123	0.82[LWK][hapmap];0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17109951	0.83[EUR][1000 genomes]
rs17109997	0.85[LWK][hapmap];0.88[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17387059	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2081568	0.81[EUR][1000 genomes]
rs2624437	0.89[EUR][1000 genomes]
rs60822733	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61580948	0.81[AMR][1000 genomes]
rs6688111	0.83[EUR][1000 genomes]
rs67012296	0.81[AMR][1000 genomes]
rs72721009	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72721010	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72721014	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72721019	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7539210	0.86[EUR][1000 genomes]
rs7553695	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871640	chr1:93807122-93953469	Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93937600-93954800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:93943200-93974400	Weak transcription	Fetal Lung	lung
3	chr1:93944000-93974600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:93944200-93952200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr1:93944200-93954800	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr1:93944200-93971800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr1:93944200-93974800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr1:93945000-93950200	Weak transcription	HepG2	liver
9	chr1:93945200-93958000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr1:93945400-93949800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr1:93946800-93958000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr1:93946800-93973200	Weak transcription	Fetal Intestine Small	intestine
13	chr1:93947400-93952000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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