Variant report

Variant	rs60822733
Chromosome Location	chr1:93950203-93950204
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1079750	0.84[AMR][1000 genomes]
rs11164930	1.00[ASN][1000 genomes]
rs11164932	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11164940	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12062584	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12069440	0.95[ASN][1000 genomes]
rs12086857	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12096122	0.86[ASN][1000 genomes]
rs12409932	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12410123	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17109997	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17387059	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72721009	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72721010	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72721014	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72721019	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871640	chr1:93807122-93953469	Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93937600-93954800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:93943200-93974400	Weak transcription	Fetal Lung	lung
3	chr1:93944000-93974600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:93944200-93952200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr1:93944200-93954800	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr1:93944200-93971800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr1:93944200-93974800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr1:93945200-93958000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr1:93946800-93958000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr1:93946800-93973200	Weak transcription	Fetal Intestine Small	intestine
11	chr1:93947400-93952000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr1:93949400-93951600	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr1:93949800-93950800	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr1:93950000-93950600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr1:93950200-93950400	Enhancers	HepG2	liver
16	chr1:93950200-93959400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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